View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14826_low_3 (Length: 294)

Name: NF14826_low_3
Description: NF14826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14826_low_3
NF14826_low_3
[»] chr5 (10 HSPs)
chr5 (56-241)||(15304627-15304816)
chr5 (171-232)||(40971858-40971919)
chr5 (155-232)||(7630626-7630703)
chr5 (149-241)||(21034619-21034711)
chr5 (150-241)||(40972119-40972210)
chr5 (151-239)||(41863732-41863820)
chr5 (188-218)||(25908660-25908690)
chr5 (148-233)||(32892430-32892515)
chr5 (154-241)||(26032249-26032336)
chr5 (190-218)||(36569826-36569854)
[»] chr4 (16 HSPs)
chr4 (152-241)||(17947286-17947375)
chr4 (153-228)||(2478935-2479010)
chr4 (152-239)||(31792623-31792710)
chr4 (148-231)||(36620910-36620993)
chr4 (151-228)||(41823537-41823614)
chr4 (181-229)||(33413853-33413901)
chr4 (155-232)||(40154647-40154723)
chr4 (146-218)||(3060565-3060637)
chr4 (148-216)||(35626977-35627045)
chr4 (144-239)||(51203212-51203307)
chr4 (151-241)||(52131906-52131996)
chr4 (188-218)||(23256993-23257023)
chr4 (188-218)||(27704722-27704752)
chr4 (188-232)||(5521245-5521289)
chr4 (154-218)||(5521526-5521590)
chr4 (205-241)||(15187191-15187227)
[»] chr3 (13 HSPs)
chr3 (151-238)||(16024807-16024894)
chr3 (175-241)||(1741991-1742057)
chr3 (147-241)||(31989798-31989892)
chr3 (150-239)||(9016893-9016982)
chr3 (149-240)||(54394304-54394395)
chr3 (188-238)||(33309686-33309736)
chr3 (151-241)||(33309945-33310035)
chr3 (170-217)||(27814549-27814596)
chr3 (150-240)||(25693294-25693384)
chr3 (208-241)||(54141631-54141664)
chr3 (150-241)||(16024519-16024610)
chr3 (169-229)||(31990157-31990217)
chr3 (188-220)||(33757434-33757466)
[»] chr1 (10 HSPs)
chr1 (151-241)||(1691295-1691385)
chr1 (152-232)||(33261690-33261769)
chr1 (152-232)||(33281849-33281928)
chr1 (154-223)||(362675-362744)
chr1 (149-240)||(27085950-27086043)
chr1 (155-241)||(14398275-14398361)
chr1 (141-240)||(27086249-27086348)
chr1 (196-232)||(2058591-2058627)
chr1 (150-218)||(34340789-34340857)
chr1 (196-228)||(37072490-37072522)
[»] chr7 (13 HSPs)
chr7 (150-240)||(33005133-33005224)
chr7 (155-239)||(18503569-18503653)
chr7 (149-241)||(15998794-15998886)
chr7 (154-241)||(14584929-14585016)
chr7 (174-228)||(33998862-33998916)
chr7 (180-227)||(2147102-2147149)
chr7 (155-233)||(39187700-39187778)
chr7 (196-232)||(26241528-26241564)
chr7 (151-231)||(33004851-33004931)
chr7 (188-238)||(25245047-25245097)
chr7 (151-232)||(30219035-30219116)
chr7 (190-218)||(2285576-2285604)
chr7 (151-203)||(9104949-9105001)
[»] chr2 (14 HSPs)
chr2 (147-241)||(35665585-35665679)
chr2 (187-232)||(578245-578290)
chr2 (152-239)||(12926506-12926593)
chr2 (140-231)||(24895742-24895833)
chr2 (151-240)||(35665325-35665414)
chr2 (151-239)||(7876443-7876529)
chr2 (152-232)||(27002982-27003062)
chr2 (189-240)||(25954749-25954800)
chr2 (175-241)||(28191733-28191799)
chr2 (180-241)||(654001-654062)
chr2 (145-228)||(43281866-43281948)
chr2 (153-239)||(578463-578548)
chr2 (145-206)||(10590726-10590787)
chr2 (170-218)||(25903607-25903655)
[»] scaffold0939 (1 HSPs)
scaffold0939 (143-240)||(707-804)
[»] chr8 (13 HSPs)
chr8 (152-241)||(158703-158792)
chr8 (150-232)||(33757870-33757952)
chr8 (169-241)||(13515628-13515700)
chr8 (169-241)||(13605161-13605233)
chr8 (153-241)||(15249582-15249670)
chr8 (174-240)||(23757308-23757374)
chr8 (153-230)||(14046461-14046536)
chr8 (145-218)||(15287386-15287459)
chr8 (145-218)||(15467755-15467828)
chr8 (187-240)||(22209993-22210046)
chr8 (143-218)||(10167723-10167798)
chr8 (150-218)||(15104821-15104889)
chr8 (190-218)||(15890103-15890131)
[»] chr6 (5 HSPs)
chr6 (155-240)||(4096768-4096853)
chr6 (157-232)||(1112026-1112101)
chr6 (149-230)||(26386489-26386568)
chr6 (170-218)||(31842475-31842523)
chr6 (152-232)||(34707889-34707969)
[»] scaffold0191 (1 HSPs)
scaffold0191 (186-218)||(4451-4483)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 56 - 241
Target Start/End: Complemental strand, 15304816 - 15304627
Alignment:
Q  56 ctccagttgtccataataagtgattcattggaccattttacaatagatcaagaaaaatatgcataattgaaatagagataat---agtatttttattaag 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||    
T  15304816 ctccagttgtccataataagtgattcattggaccattttacaatagatcaagaaaaatatgcataattgaaatagagataatagtagtatttttagtaag 15304717  T
Q  153 ggttaaataacttttccgtccttatatatatat-taaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    ||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  15304716 ggttaaataacttttccgtccttatatatatatatatattttgcttttagtccttaaaaaataaaatgagatgtttttatcttcacaaaa 15304627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 40971858 - 40971919
Alignment:
Q  171 tccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  40971858 tccttataaatataataaattttgattttagtccctaaaaaataaaatgagatgttttcatc 40971919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 7630703 - 7630626
Alignment:
Q  155 ttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    |||||||| |||| ||||  |||| |||||| |||||||| |||||||||||||||||||||| ||||||||||||||    
T  7630703 ttaaataagtttttcgtctctataaatatatcaaattttgattttagtccctaaaaaataaaaagagatgttttcatc 7630626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 21034619 - 21034711
Alignment:
Q  149 taagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||||||||||||| ||||   ||| |||| |||||| |||||||| || ||||||| |||||||||||||||||||||||| | ||||||||    
T  21034619 taagggttaaataagtttttgttccctataaatatatcaaattttgattatagtccccaaaaaataaaatgagatgttttcaccctcacaaaa 21034711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 40972210 - 40972119
Alignment:
Q  150 aagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    ||||||||||||| |||| | ||| |||| |||||   ||||||| |||||||||||||||||||||||   ||||||| ||| ||||||||    
T  40972210 aagggttaaataattttttcatccctataaatataacgaattttgattttagtccctaaaaaataaaatagaatgtttttatcctcacaaaa 40972119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 41863820 - 41863732
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaa 239  Q
    |||||||||||| |||| | ||| | || |||||| ||| |||  ||||| || ||| |||||||||||||||||||||||| ||||||    
T  41863820 agggttaaataagtttttcatccctgtaaatatatcaaaattttattttaatctctataaaataaaatgagatgttttcatcctcacaa 41863732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 25908690 - 25908660
Alignment:
Q  188 aattttgtttttagtccctaaaaaataaaat 218  Q
    |||||||||||||||||||||||||||||||    
T  25908690 aattttgtttttagtccctaaaaaataaaat 25908660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 32892515 - 32892430
Alignment:
Q  148 ttaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatct 233  Q
    ||||||||||||||| |||| | || ||||| |||||   ||||||| |||||||| ||| ||||||||||   ||||||||||||    
T  32892515 ttaagggttaaataagtttttcttctttatagatatagcgaattttgattttagtctctataaaataaaattgaatgttttcatct 32892430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 26032249 - 26032336
Alignment:
Q  154 gttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaa-taaaatgagatgttttcatcttcacaaaa 241  Q
    ||||||||| |||| ||||| |||| |||||   ||||||| ||||| ||||||||||| |||| ||| ||||||||||| ||||||||    
T  26032249 gttaaataagtttttcgtccctataaatatagcgaattttgattttaatccctaaaaaattaaactga-atgttttcatcctcacaaaa 26032336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 36569854 - 36569826
Alignment:
Q  190 ttttgtttttagtccctaaaaaataaaat 218  Q
    |||||||||||||||||||||||||||||    
T  36569854 ttttgtttttagtccctaaaaaataaaat 36569826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 17947375 - 17947286
Alignment:
Q  152 gggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    ||||||||||| |||| | ||| |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  17947375 gggttaaataaatttttcatccctataaatatatcaaattttgattttagtccctaaaaaataaaatgagatgttttcatcctcacaaaa 17947286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 2478935 - 2479010
Alignment:
Q  153 ggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgtttt 228  Q
    |||||||||| |||| ||||| |||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  2478935 ggttaaataagtttttcgtccctataaatatatttaattttgattttagtccctaaaaattaaaatgagatgtttt 2479010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 31792623 - 31792710
Alignment:
Q  152 gggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaa 239  Q
    ||||||||||| |||| ||||| |||| |||||| |||||||| |||||||  |||||||||||||||| ||||||||||| ||||||    
T  31792623 gggttaaataaatttttcgtccctataaatatatcaaattttgattttagtttctaaaaaataaaatgaaatgttttcatcctcacaa 31792710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 36620910 - 36620993
Alignment:
Q  148 ttaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcat 231  Q
    ||||| ||||||||| |||| |||   |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  36620910 ttaagagttaaataagtttttcgtaactataaatatattaaattttgattttagttcctaaaaaataaaatgagatgttttcat 36620993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 41823537 - 41823614
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgtttt 228  Q
    |||||||||||| |||| | |||| ||| |||||| |||||||| ||||| ||| ||||| |||||||||||||||||    
T  41823537 agggttaaataagtttttcatcctcataaatatatcaaattttgattttaatccttaaaagataaaatgagatgtttt 41823614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 33413853 - 33413901
Alignment:
Q  181 tatattaaattttgtttttagtccctaaaaaataaaatgagatgttttc 229  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||||||    
T  33413853 tatagtaaattttgatattagtccctaaaaaataaaatgagatgttttc 33413901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 40154723 - 40154647
Alignment:
Q  155 ttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    |||||||| |||| ||||| |||| |||||| ||| |||| |||||||| ||||||| |||||||| |||||||||||    
T  40154723 ttaaataagtttttcgtccctataaatatatcaaaatttgattttagtctctaaaaa-taaaatgacatgttttcatc 40154647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 3060637 - 3060565
Alignment:
Q  146 tattaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaat 218  Q
    ||||||||||||| ||| ||||  |||| |||| |||| |  | |||||||||||||||||||||||||||||    
T  3060637 tattaagggttaattaagtttttagtccctataaatatttacagttttgtttttagtccctaaaaaataaaat 3060565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 35626977 - 35627045
Alignment:
Q  148 ttaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaa 216  Q
    ||||||||||| ||| ||||  |||| |||| |||| |||| |||||||||||||||||| ||||||||    
T  35626977 ttaagggttaattaagtttttggtccctataaatatcttaagttttgtttttagtccctataaaataaa 35627045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 51203212 - 51203307
Alignment:
Q  144 tttattaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaa 239  Q
    |||||| | |||||||||| |||| ||||| |||| ||||    ||||||| |||||||||||||||||||||||   ||| ||||||| ||||||    
T  51203212 tttatttatggttaaataagtttttcgtccctataaatattgcgaattttgattttagtccctaaaaaataaaatagaatgctttcatcctcacaa 51203307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 52131906 - 52131996
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaa-taaaatgagatgttttcatcttcacaaaa 241  Q
    |||||||||||| || ||||||| || | |||||   ||||||| ||||||||| ||||||| |||||||| ||||||||||| ||||||||    
T  52131906 agggttaaataagttatccgtccctacaaatataacgaattttgattttagtccataaaaaattaaaatga-atgttttcatcctcacaaaa 52131996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 23256993 - 23257023
Alignment:
Q  188 aattttgtttttagtccctaaaaaataaaat 218  Q
    |||||||||||||||||||||||||||||||    
T  23256993 aattttgtttttagtccctaaaaaataaaat 23257023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 27704752 - 27704722
Alignment:
Q  188 aattttgtttttagtccctaaaaaataaaat 218  Q
    |||||||||||||||||||||||||||||||    
T  27704752 aattttgtttttagtccctaaaaaataaaat 27704722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 5521245 - 5521289
Alignment:
Q  188 aattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    ||||||| ||| |||| ||||||||| ||||||||||||||||||    
T  5521245 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatc 5521289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 5521590 - 5521526
Alignment:
Q  154 gttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaat 218  Q
    ||||||||| |||| ||||| |||| |||||   ||||||| ||||||||| |||||||||||||    
T  5521590 gttaaataagtttttcgtccctataaatatagcgaattttgattttagtccttaaaaaataaaat 5521526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 15187227 - 15187191
Alignment:
Q  205 ctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||||||||||||||||||||||| || |||||||||    
T  15187227 ctaaaaaataaaatgagatgtttttatattcacaaaa 15187191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 16024894 - 16024807
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcaca 238  Q
    |||||||||||| || | ||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  16024894 agggttaaataagttattcgtccctataaatatatcaaattttgattttagtccctaaaaaataaaatgagatgttttcatcctcaca 16024807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 1741991 - 1742057
Alignment:
Q  175 tatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  1741991 tataaatatatcaaattttgattttaatccctaaaaaataaaatgagatgttttcatcctcacaaaa 1742057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 31989798 - 31989892
Alignment:
Q  147 attaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||||||||||||||| |||| ||||| |||| |||||| |||||||  |||||||||||||||||| ||||   | ||||||||| ||||||||    
T  31989798 attaagggttaaataagtttttcgtccatataaatatatcaaattttcattttagtccctaaaaaattaaattgaacgttttcatcctcacaaaa 31989892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 9016982 - 9016893
Alignment:
Q  150 aagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaa 239  Q
    |||||||||||||  ||| ||||  |||| |||||| ||| |||| |||| |||||||| ||||||||||| ||||||||||| ||||||    
T  9016982 aagggttaaataaacttttcgtctctataaatatatcaaactttggttttcgtccctaacaaataaaatgaaatgttttcatcctcacaa 9016893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 54394304 - 54394395
Alignment:
Q  149 taagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaa 240  Q
    |||||||||||||| |||| ||| ||||||  ||||   ||||||| |||||||||||||||||| ||||   |||||||||| ||||||||    
T  54394304 taagggttaaataagtttttcgttcttataactataaagaattttgattttagtccctaaaaaattaaattgaatgttttcatattcacaaa 54394395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 33309686 - 33309736
Alignment:
Q  188 aattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcaca 238  Q
    ||||||| |||||||||||||||||||||| | |||||||||||| |||||    
T  33309686 aattttgattttagtccctaaaaaataaaacgggatgttttcatcctcaca 33309736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 33310035 - 33309945
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||||||||||| |||| | ||| || |||||||   ||||||  |||||||||||||||||||||| | | |||||||||| ||||||||    
T  33310035 agggttaaataagtttttcttccctaaatatatagcgaatttttattttagtccctaaaaaataaaacggggtgttttcatcctcacaaaa 33309945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 27814596 - 27814549
Alignment:
Q  170 gtccttatatatatattaaattttgtttttagtccctaaaaaataaaa 217  Q
    ||||||||| |||| || |||||||||||||||||||| |||||||||    
T  27814596 gtccttataaatattttgaattttgtttttagtccctataaaataaaa 27814549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 25693294 - 25693384
Alignment:
Q  150 aagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaa 240  Q
    ||||||||||||| |||| ||||| ||||  ||||  | |||||| |||| |||| || ||||||||| ||| |||||||||| |||||||    
T  25693294 aagggttaaataagtttttcgtccctataattataacatattttgattttggtccttataaaataaaacgaggtgttttcatcctcacaaa 25693384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 54141664 - 54141631
Alignment:
Q  208 aaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    ||||||||||||||||||||||||| ||||||||    
T  54141664 aaaaataaaatgagatgttttcatcctcacaaaa 54141631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 16024519 - 16024610
Alignment:
Q  150 aagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaa-tgagatgttttcatcttcacaaaa 241  Q
    ||||||||||||| |||| ||||   ||| |||||   ||||||| ||||| |||||||||||| ||| ||| ||||||||||||||||||||    
T  16024519 aagggttaaataagtttttcgtctcaataaatatagcgaattttgattttaatccctaaaaaattaaactga-atgttttcatcttcacaaaa 16024610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 31990217 - 31990157
Alignment:
Q  169 cgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttc 229  Q
    ||||| |||| |||||| |||||||  ||||||||||||| ||| |||||||||| |||||    
T  31990217 cgtccctataaatatatcaaattttaattttagtccctaagaaacaaaatgagatattttc 31990157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 33757434 - 33757466
Alignment:
Q  188 aattttgtttttagtccctaaaaaataaaatga 220  Q
    |||||||||||||||||||| ||||||||||||    
T  33757434 aattttgtttttagtccctacaaaataaaatga 33757466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 1691295 - 1691385
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||||||||||| |||| ||||| |||| ||| |||||| |||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  1691295 agggttaaataagtttttcgtccctatagatacattaaaatttgattttagtccctaaaatgtaaaatgagatgttttcatcttcacaaaa 1691385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 33261690 - 33261769
Alignment:
Q  152 gggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    ||||||||||| |||| |||||||||| | |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  33261690 gggttaaataagtttttcgtccttataaa-atatcaaattttgattttagtccctaaaaaataaaatgagatgttttcatc 33261769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 33281849 - 33281928
Alignment:
Q  152 gggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    ||||||||||| |||| |||||||||| | |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  33281849 gggttaaataagtttttcgtccttataaa-atatcaaattttgattttagtccctaaaaaataaaatgagatgttttcatc 33281928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 362675 - 362744
Alignment:
Q  154 gttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagat 223  Q
    ||||||||| |||| ||||| |||| |||||||||| |||| ||||| ||||||||||||||||||||||    
T  362675 gttaaataagtttttcgtccctataaatatattaaaatttgattttaatccctaaaaaataaaatgagat 362744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 27085950 - 27086043
Alignment:
Q  149 taagggttaaataacttttccgtccttatatatatattaaat-tttgtttttagtccctaaaaaataaaa-tgagatgttttcatcttcacaaa 240  Q
    ||||||||||||||  |||  ||||||||| |||||| |||  |||  |||||||||||||||||||||| ||||||||||||||| |||||||    
T  27085950 taagggttaaataagatttttgtccttataaatatatcaaaaatttaattttagtccctaaaaaataaaaatgagatgttttcatcctcacaaa 27086043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 14398361 - 14398275
Alignment:
Q  155 ttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    ||||| || |||| ||||| | || |||||| |||||||| |||||||  |||| ||||||||||||||||||||||| ||| ||||    
T  14398361 ttaaaaaagtttttcgtccatgtaaatatatcaaattttgattttagtttctaacaaataaaatgagatgttttcatcctcataaaa 14398275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 27086348 - 27086249
Alignment:
Q  141 atttttattaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaa-taaaatgagatgttttcatcttcacaa 239  Q
    |||| |||| |||||||||||| |||| | |||||||| |||||  ||||| || ||||||||| ||||||| |||| ||| ||||||||||| ||||||    
T  27086348 atttatatttagggttaaataagtttttcatccttataaatataacaaattctgattttagtccttaaaaaattaaactga-atgttttcatcctcacaa 27086250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 2058591 - 2058627
Alignment:
Q  196 ttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  2058591 ttttaatccctaaaaagtaaaatgagatgttttcatc 2058627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 34340857 - 34340789
Alignment:
Q  150 aagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaat 218  Q
    ||||||||| ||| ||||| |||| |||| |||| |  | |||||||||||||||||| ||||||||||    
T  34340857 aagggttaattaagttttcagtccctataaatatttacagttttgtttttagtccctacaaaataaaat 34340789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 37072522 - 37072490
Alignment:
Q  196 ttttagtccctaaaaaataaaatgagatgtttt 228  Q
    |||||||| ||||||||||||||||||||||||    
T  37072522 ttttagtctctaaaaaataaaatgagatgtttt 37072490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 33005224 - 33005133
Alignment:
Q  150 aagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaa-aaaataaaatgagatgttttcatcttcacaaa 240  Q
    ||||||||||||| |||| ||||| |||| ||||||||||||||| |||| |||||||| |||||||||||||| ||||||||| |||||||    
T  33005224 aagggttaaataagtttttcgtccctataaatatattaaattttgcttttcgtccctaaaaaaataaaatgagaagttttcatcctcacaaa 33005133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 18503569 - 18503653
Alignment:
Q  155 ttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaa 239  Q
    |||| ||| |||| |||||||||| |||||| |||||||| ||||  ||||||||||||||||||||||||||||||| ||||||    
T  18503569 ttaactaagtttttcgtccttataaatatatcaaattttgatttttatccctaaaaaataaaatgagatgttttcatcctcacaa 18503653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 15998794 - 15998886
Alignment:
Q  149 taagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||| ||||||||| |||| ||||  || | ||||| ||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||    
T  15998794 taagagttaaataattttttcgtctctaaaaatatagtaaattttgattttagtccctaaaaaataaaacgtgatgttttcatcatcacaaaa 15998886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 14584929 - 14585016
Alignment:
Q  154 gttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    ||||||||| |||| ||||  || | ||||| ||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||    
T  14584929 gttaaataattttttcgtctctaaaaatataataaattttgattttagtccctaaaaaataaaacgtgatgttttcatcatcacaaaa 14585016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 33998916 - 33998862
Alignment:
Q  174 ttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgtttt 228  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  33998916 ttataaatatattaaattttgattttagtccctaaaaaataaaatgagatatttt 33998862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 2147149 - 2147102
Alignment:
Q  180 atatattaaattttgtttttagtccctaaaaaataaaatgagatgttt 227  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||||    
T  2147149 atatattaaattttagttttcgtccctaaaaaataaaatgagatgttt 2147102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 39187778 - 39187700
Alignment:
Q  155 ttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatct 233  Q
    |||||||| |||| ||| | |||| ||||| | ||||||| ||||||||  || |||||||||||||||||||||||||    
T  39187778 ttaaataagtttttcgttcctataaatataatgaattttgattttagtctttagaaaataaaatgagatgttttcatct 39187700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 26241564 - 26241528
Alignment:
Q  196 ttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    ||||| |||||||||||||||||||||||||||||||    
T  26241564 ttttaatccctaaaaaataaaatgagatgttttcatc 26241528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 33004851 - 33004931
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcat 231  Q
    ||||||| |||| |||||  |||||||| ||||||||||||||| ||||||||  |||||||| ||||   ||||||||||    
T  33004851 agggttagataaattttcaatccttataaatatattaaattttgattttagtctttaaaaaattaaattgaatgttttcat 33004931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 25245047 - 25245097
Alignment:
Q  188 aattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcaca 238  Q
    ||||||| ||||  ||||||||| ||||||||| |||||||||||||||||    
T  25245047 aattttgattttgatccctaaaatataaaatgaaatgttttcatcttcaca 25245097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 30219116 - 30219035
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtcccta-aaaaataaaatgagatgttttcatc 232  Q
    |||||||||||| |||| |||||||||| |||||   ||||||| |||||||||||| |||| |||| ||| |||||||||||    
T  30219116 agggttaaataagtttttcgtccttataaatatagcgaattttgattttagtccctacaaaactaaactga-atgttttcatc 30219035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 2285604 - 2285576
Alignment:
Q  190 ttttgtttttagtccctaaaaaataaaat 218  Q
    |||||||||||||||||||||||||||||    
T  2285604 ttttgtttttagtccctaaaaaataaaat 2285576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 9105001 - 9104949
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtc 203  Q
    |||||||||||| ||||   |||||||||||||| | ||||||||||||||||    
T  9105001 agggttaaataagttttttatccttatatatatagttaattttgtttttagtc 9104949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 35665679 - 35665585
Alignment:
Q  147 attaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||||||||||||||| ||||  |||| ||||   |||| ||| |||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  35665679 attaagggttaaataaattttttgtccctataagcatatcaaaatttgattttagtccctaaaaactaaaatgagatgttttcatcctcacaaaa 35665585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 578245 - 578290
Alignment:
Q  187 aaattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  578245 aaattttgattttagtccctaaaaaataaaatgagatgttttcatc 578290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 12926506 - 12926593
Alignment:
Q  152 gggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaa 239  Q
    ||||||||||| |||| | ||  |||| ||||||| ||||||| |||| |||||| |||||||||||||| |||||||||| ||||||    
T  12926506 gggttaaataagtttttcatcactataaatatattgaattttgattttcgtccctgaaaaataaaatgagttgttttcatcctcacaa 12926593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 24895833 - 24895742
Alignment:
Q  140 tatttttattaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcat 231  Q
    |||||||||  |||||||||||| |||| |||||||| | |||||  |||||||| |||||||||||| ||||||||||   ||||||||||    
T  24895833 tatttttatacagggttaaataagtttttcgtccttacaaatataacaaattttgattttagtccctacaaaataaaattgaatgttttcat 24895742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 35665325 - 35665414
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaa-taaaatgagatgttttcatcttcacaaa 240  Q
    |||||||||||| |||| |||||||||| |||||   ||||||| ||||||||||||||||| |||| ||| ||||||||||| |||||||    
T  35665325 agggttaaataagtttttcgtccttataaatatagcgaattttgattttagtccctaaaaaattaaagtga-atgttttcatcctcacaaa 35665414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 7876529 - 7876443
Alignment:
Q  151 agggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaa 239  Q
    |||||||||||| |||| |||||||||| ||||| | ||||||| ||||| ||||||||||   ||||||||||| |||||| ||||||    
T  7876529 agggttaaataaatttttcgtccttataaatataatgaattttgattttaatccctaaaaa--taaatgagatgtgttcatcctcacaa 7876443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 27003062 - 27002982
Alignment:
Q  152 gggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    ||||||||||| | || ||||| |||| |||| | |||||| | |||||||||||||||||||||||||||| || |||||    
T  27003062 gggttaaataagtgtttcgtccctataaatatgtcaaatttggattttagtccctaaaaaataaaatgagatattatcatc 27002982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 25954800 - 25954749
Alignment:
Q  189 attttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaa 240  Q
    |||||| |||||||  |||||||||||||||||||||||||||| |||||||    
T  25954800 attttgattttagtttctaaaaaataaaatgagatgttttcatcctcacaaa 25954749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 28191799 - 28191733
Alignment:
Q  175 tatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||| |||||| |||||||| ||||| ||  || |||||||||||||||||||||||| ||||||||    
T  28191799 tataaatatatcaaattttgattttaatctttacaaaataaaatgagatgttttcatcctcacaaaa 28191733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 654001 - 654062
Alignment:
Q  180 atatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||||||||| ||||  |||| |||||||||| |||||| ||||||||||||| ||||||||    
T  654001 atatattaaaatttgactttattccctaaaaattaaaatcagatgttttcatcctcacaaaa 654062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 43281948 - 43281866
Alignment:
Q  145 ttattaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgtttt 228  Q
    ||||| |||||||||||| |||| | |||| ||| |||||  |||||||| ||||||| ||||||| |||||||||||| ||||    
T  43281948 ttatttagggttaaataagtttttcatcctaata-atataacaaattttgattttagttcctaaaatataaaatgagatttttt 43281866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 578548 - 578463
Alignment:
Q  153 ggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaa 239  Q
    |||||||||| ||||| |||| |||| || || | ||||||| |||||||||||||||||||||||   ||||| ||||| ||||||    
T  578548 ggttaaataagttttc-gtccatataaatgtagtgaattttgattttagtccctaaaaaataaaatagaatgttgtcatcctcacaa 578463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 10590787 - 10590726
Alignment:
Q  145 ttattaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccct 206  Q
    |||||||||||||||||  ||||  ||||||||| ||||||||| ||||  |||||||||||    
T  10590787 ttattaagggttaaatatgtttttggtccttataaatatattaactttttgttttagtccct 10590726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 25903655 - 25903607
Alignment:
Q  170 gtccttatatatatattaaattttgtttttagtccctaaaaaataaaat 218  Q
    |||| |||| |||| | ||||||||||||||||||||| ||||||||||    
T  25903655 gtccctataaatatttaaaattttgtttttagtccctataaaataaaat 25903607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 804 - 707
Alignment:
Q  143 ttttattaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaa 240  Q
    |||| ||||||||||||||| |||| ||||| |||| |||||  |||||||  ||||| ||||||||||||| |||||| |||||||||| |||||||    
T  804 tttttttaagggttaaataaatttttcgtccctataaatataacaaattttaattttattccctaaaaaatataatgagttgttttcatcatcacaaa 707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 158703 - 158792
Alignment:
Q  152 gggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    ||||||||||| |||| ||||  | || |||||| |||||||| |||| ||||||||||||||||||||||||||||||||  |||||||    
T  158703 gggttaaataagtttttcgtctatgtaaatatatcaaattttggttttggtccctaaaaaataaaatgagatgttttcatccacacaaaa 158792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 33757870 - 33757952
Alignment:
Q  150 aagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    ||||||||||||| |||| | ||| |||| ||||||||||||||| ||||||||  | |||||| ||||||||||||||||||    
T  33757870 aagggttaaataagtttttcatccctataaatatattaaattttgattttagtctttcaaaaatgaaatgagatgttttcatc 33757952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 13515700 - 13515628
Alignment:
Q  169 cgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||||||||| |||||| |||||||  ||||||||||||||| ||||||| ||||||||||||  ||||||||    
T  13515700 cgtccttataaatatatcaaattttaattttagtccctaaaatataaaattagatgttttcatagtcacaaaa 13515628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 13605233 - 13605161
Alignment:
Q  169 cgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    |||||||||| |||||| |||||||  ||||||||||||||| ||||||| ||||||||||||  ||||||||    
T  13605233 cgtccttataaatatatcaaattttaattttagtccctaaaatataaaattagatgttttcatagtcacaaaa 13605161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 15249670 - 15249582
Alignment:
Q  153 ggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaaa 241  Q
    ||||||||||  ||| | ||| |||| | |||| |||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||    
T  15249670 ggttaaataagcttttcatccctataaacatatcaaattttgattttcgtcactaaaaaataaaatgagatgttttcatcctcacaaaa 15249582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 23757308 - 23757374
Alignment:
Q  174 ttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaa 240  Q
    ||||| |||||  |||||||  ||||| ||||||||||||||||||||||||||||||| |||||||    
T  23757308 ttataaatatagcaaattttaattttaatccctaaaaaataaaatgagatgttttcatcctcacaaa 23757374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 14046461 - 14046536
Alignment:
Q  153 ggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttca 230  Q
    |||||||||||||||| || |||||| |||||| ||| |||| ||||||||||| ||||||||||||| |||||||||    
T  14046461 ggttaaataacttttc-gttcttataaatatatcaaaatttgattttagtccct-aaaaataaaatgaaatgttttca 14046536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 15287459 - 15287386
Alignment:
Q  145 ttattaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaat 218  Q
    ||||| |||||||| ||| ||||  |||| |||| ||||||  |||||||||||||||||||| ||||||||||    
T  15287459 ttatttagggttaattaagtttttagtccctataaatatatagaattttgtttttagtccctacaaaataaaat 15287386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 15467828 - 15467755
Alignment:
Q  145 ttattaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaat 218  Q
    ||||| |||||||| ||| ||||  |||| |||| ||||||  |||||||||||||||||||| ||||||||||    
T  15467828 ttatttagggttaattaagtttttagtccctataaatatatagaattttgtttttagtccctacaaaataaaat 15467755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 22209993 - 22210046
Alignment:
Q  187 aaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaa 240  Q
    |||||||| |||| || ||||||| ||||||||||||||||||||| |||||||    
T  22209993 aaattttgatttttgttcctaaaagataaaatgagatgttttcatcctcacaaa 22210046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 10167798 - 10167723
Alignment:
Q  143 ttttattaagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaat 218  Q
    |||||||  ||||||| ||| ||||  |||| |||| |||| |  |||||||||||||||||||||||||||||||    
T  10167798 ttttattttgggttaattaagtttttagtccctataaatatttagaattttgtttttagtccctaaaaaataaaat 10167723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 15104821 - 15104889
Alignment:
Q  150 aagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaat 218  Q
    ||||||||| ||| ||||  |||| |||| |||| | |||||||||||||||||| || ||||||||||    
T  15104821 aagggttaattaagtttttagtccctataaatatttaaaattttgtttttagtccttacaaaataaaat 15104889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 15890103 - 15890131
Alignment:
Q  190 ttttgtttttagtccctaaaaaataaaat 218  Q
    |||||||||||||||||||||||||||||    
T  15890103 ttttgtttttagtccctaaaaaataaaat 15890131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 4096853 - 4096768
Alignment:
Q  155 ttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatcttcacaaa 240  Q
    |||||||| |||| ||||| |||| ||| || |||||||| ||||| |||||||||||| |||||||||||||||||| |||||||    
T  4096853 ttaaataaatttttcgtccctataaataaatcaaattttgattttaatccctaaaaaattaaatgagatgttttcatcatcacaaa 4096768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 1112101 - 1112026
Alignment:
Q  157 aaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    |||||| |||| ||||| |||| |||||| | |||||  ||||| |||||||||||| ||||||||||||||||||    
T  1112101 aaataagtttttcgtccctataaatatatcatattttaattttaatccctaaaaaattaaatgagatgttttcatc 1112026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 26386568 - 26386489
Alignment:
Q  149 taagggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttca 230  Q
    |||||||||||||| |||||  | | |||| |||||| |||||||| || ||| ||| |||||||||||||||||| |||||    
T  26386568 taagggttaaataagttttc--ttcctataaatatatcaaattttgattatagcccccaaaaaataaaatgagatgctttca 26386489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 31842475 - 31842523
Alignment:
Q  170 gtccttatatatatattaaattttgtttttagtccctaaaaaataaaat 218  Q
    ||||||||| |||| |  |||||||||||||||||||| ||||||||||    
T  31842475 gtccttataaatatttagaattttgtttttagtccctacaaaataaaat 31842523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 34707969 - 34707889
Alignment:
Q  152 gggttaaataacttttccgtccttatatatatattaaattttgtttttagtccctaaaaaataaaatgagatgttttcatc 232  Q
    |||||||| || | || ||||| |||| |||| | |||||| | ||||||||||||||||| |||||||||| || |||||    
T  34707969 gggttaaaaaagtgtttcgtccctataaatatgtcaaatttggattttagtccctaaaaaaaaaaatgagatattatcatc 34707889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 4483 - 4451
Alignment:
Q  186 taaattttgtttttagtccctaaaaaataaaat 218  Q
    |||||||||||||||||||||| ||||||||||    
T  4483 taaattttgtttttagtccctacaaaataaaat 4451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University