View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14826_low_5 (Length: 270)

Name: NF14826_low_5
Description: NF14826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14826_low_5
NF14826_low_5
[»] chr8 (9 HSPs)
chr8 (34-238)||(5875090-5875294)
chr8 (68-166)||(5873172-5873270)
chr8 (103-174)||(35885335-35885406)
chr8 (103-175)||(39656892-39656964)
chr8 (107-173)||(788026-788092)
chr8 (86-144)||(27322548-27322606)
chr8 (94-174)||(1488455-1488535)
chr8 (97-174)||(510452-510529)
chr8 (106-175)||(35886091-35886160)
[»] chr4 (14 HSPs)
chr4 (107-175)||(35428141-35428209)
chr4 (103-173)||(24471830-24471900)
chr4 (68-173)||(17979057-17979162)
chr4 (107-175)||(5825332-5825400)
chr4 (85-173)||(38320420-38320508)
chr4 (34-144)||(32449346-32449456)
chr4 (103-169)||(38321280-38321346)
chr4 (106-174)||(24472588-24472656)
chr4 (69-173)||(32894644-32894748)
chr4 (103-173)||(17978263-17978333)
chr4 (103-173)||(37142690-37142760)
chr4 (69-178)||(49346101-49346211)
chr4 (85-175)||(49708685-49708775)
chr4 (79-174)||(55879793-55879889)
[»] chr1 (14 HSPs)
chr1 (104-172)||(4124701-4124769)
chr1 (107-173)||(51977180-51977246)
chr1 (115-173)||(4125407-4125465)
chr1 (68-174)||(51610164-51610270)
chr1 (69-174)||(51129372-51129477)
chr1 (68-131)||(29152292-29152355)
chr1 (104-174)||(11032198-11032268)
chr1 (104-172)||(49961460-49961528)
chr1 (123-174)||(15374695-15374746)
chr1 (69-144)||(49420113-49420188)
chr1 (115-174)||(49959953-49960012)
chr1 (127-173)||(3788435-3788481)
chr1 (104-174)||(11426852-11426922)
chr1 (104-173)||(11031431-11031500)
[»] chr6 (4 HSPs)
chr6 (44-175)||(3802729-3802860)
chr6 (44-174)||(3802063-3802193)
chr6 (69-173)||(1528561-1528665)
chr6 (86-171)||(1529372-1529457)
[»] chr5 (10 HSPs)
chr5 (104-173)||(1282946-1283015)
chr5 (115-173)||(1282254-1282312)
chr5 (68-175)||(39949490-39949597)
chr5 (136-173)||(42310849-42310886)
chr5 (67-134)||(6903210-6903277)
chr5 (103-174)||(39950311-39950382)
chr5 (107-144)||(4789549-4789586)
chr5 (97-173)||(30003538-30003614)
chr5 (79-143)||(39149423-39149487)
chr5 (69-173)||(41784622-41784726)
[»] chr2 (11 HSPs)
chr2 (58-173)||(5505153-5505268)
chr2 (107-173)||(5504344-5504410)
chr2 (68-173)||(2992798-2992903)
chr2 (69-144)||(30545379-30545454)
chr2 (136-173)||(42946480-42946517)
chr2 (97-173)||(6197915-6197991)
chr2 (69-173)||(17947880-17947984)
chr2 (103-173)||(2992002-2992072)
chr2 (127-173)||(26021913-26021959)
chr2 (69-134)||(8146599-8146664)
chr2 (104-144)||(34617682-34617722)
[»] chr7 (14 HSPs)
chr7 (34-143)||(29006377-29006487)
chr7 (103-165)||(34996885-34996947)
chr7 (125-173)||(25530377-25530423)
chr7 (34-143)||(29007106-29007217)
chr7 (68-174)||(34367361-34367466)
chr7 (58-148)||(34997674-34997764)
chr7 (67-143)||(23632953-23633028)
chr7 (123-174)||(9378728-9378779)
chr7 (103-173)||(3820394-3820464)
chr7 (123-173)||(9379793-9379843)
chr7 (69-174)||(38315783-38315888)
chr7 (69-174)||(41712964-41713069)
chr7 (58-134)||(12924148-12924224)
chr7 (107-159)||(42607095-42607147)
[»] chr3 (7 HSPs)
chr3 (123-175)||(42146798-42146849)
chr3 (123-173)||(42147546-42147596)
chr3 (127-173)||(50306525-50306571)
chr3 (125-174)||(7359842-7359891)
chr3 (69-173)||(1128170-1128274)
chr3 (125-173)||(23379332-23379380)
chr3 (124-168)||(53393212-53393256)
[»] scaffold0016 (1 HSPs)
scaffold0016 (123-173)||(67247-67297)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 5875090 - 5875294
Alignment:
Q  34 gaagaatatggtgaaagagaaagcaaaataatcaagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttccca 133  Q
    |||||| |||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5875090 gaagaaaatggtgaaagagaaagtaaaaaaatcaagtgtggacataccatcataaaatctgtattcctttttaatttaatggtcaagaacaactttccca 5875189  T
Q  134 tagtgggaaactcttccccattcccaccctaaatgccacctacttcattagcgctctcaatgttatttatttatttcttttgaatatttttgagatgtct 233  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5875190 tagtggaaaactcttccccattcccaccctaaatgccacctacttcattagcgctcccaatgttatttatttatttcttttgaatatttttgagatgtct 5875289  T
Q  234 atacc 238  Q
    |||||    
T  5875290 atacc 5875294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 5873270 - 5873172
Alignment:
Q  68 agtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaa 166  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||| | |||||||||||||||    
T  5873270 agtgtggacagaccatcataaaatatgtgttcctttttaatctaatggtcaagaaatactttcccatagttggaaactctttctcattcccaccctaaa 5873172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 35885406 - 35885335
Alignment:
Q  103 tttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    ||||||||||||||||| ||  ||||| | || |||||||||||||  ||||||||||||||||||||||||    
T  35885406 tttaatctaatggtcaataaagacttttctatggtgggaaactcttttccattcccaccctaaatgccacct 35885335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 39656892 - 39656964
Alignment:
Q  103 tttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccaccta 175  Q
    ||||||||| |||| || || |||||||| ||||| |||||||||| ||| | ||||||||||||||||||||    
T  39656892 tttaatctattggtaaaaaaaaactttcctatagtaggaaactctttcccctacccaccctaaatgccaccta 39656964  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 788092 - 788026
Alignment:
Q  107 atctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||||||||||  || |||||| | || |||||||||| || ||||||||||||||||||||||||    
T  788092 atctaatggtcagaaaaaactttgctatggtgggaaactttttcccattcccaccctaaatgccacc 788026  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 27322548 - 27322606
Alignment:
Q  86 taaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaac 144  Q
    |||||||||||  ||| |||||| ||||||||||||| ||||||||||| |||||||||    
T  27322548 taaaatctgtacacctctttaatttaatggtcaagaataactttcccatcgtgggaaac 27322606  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 1488455 - 1488535
Alignment:
Q  94 gtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    |||||||| ||| ||| ||||||| | | ||||||||| || |||| |||||||| ||| |||||| ||||||||||||||    
T  1488455 gtattcctatttgatccaatggtccaaatcaactttcctatggtggaaaactctttccccttcccatcctaaatgccacct 1488535  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 510529 - 510452
Alignment:
Q  97 ttcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    ||||| |||||| ||||||| || ||| ||||||||||| |||| || |||| ||| | ||||| |||||||||||||    
T  510529 ttcctatttaatttaatggttaaaaactactttcccataatggggaattctttcccttacccactctaaatgccacct 510452  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 35886091 - 35886160
Alignment:
Q  106 aatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccaccta 175  Q
    |||||||||||||| ||| | ||||  |  ||||||||||||| || ||||| |||||||||||||||||    
T  35886091 aatctaatggtcaaaaactattttcttacggtgggaaactctttcctattcctaccctaaatgccaccta 35886160  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 35428141 - 35428209
Alignment:
Q  107 atctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccaccta 175  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35428141 atctgatggtcatgaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccaccta 35428209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 24471900 - 24471830
Alignment:
Q  103 tttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||||||||||||||| ||  ||||||| || |||||||||||||  |||||||||||||||||||||||    
T  24471900 tttaatctaatggtcaataaagactttcctatggtgggaaactcttttccattcccaccctaaatgccacc 24471830  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 17979057 - 17979162
Alignment:
Q  68 agtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaat 167  Q
    |||||| |||| |||| |||||||| ||| |||| | ||||||||||||  | || |||||| ||||||||| |||||||| |||   ||||||||||||    
T  17979057 agtgtgcacaacccatgataaaatcagtactcctctctaatctaatggtataaaaaaacttttccatagtggaaaactctttccctcacccaccctaaat 17979156  T
Q  168 gccacc 173  Q
    ||||||    
T  17979157 gccacc 17979162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 5825400 - 5825332
Alignment:
Q  107 atctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccaccta 175  Q
    |||||||||| |  || |||||| | || ||||||||||||| ||||||||||||||||||||||||||    
T  5825400 atctaatggttagaaaaaactttgctatggtgggaaactctttcccattcccaccctaaatgccaccta 5825332  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 38320508 - 38320420
Alignment:
Q  85 ataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||||||| ||| |||| | |||| |||||||||| ||  |||||||| | ||||||||||||| ||  ||||||||||||||||||||    
T  38320508 ataaaatcggtactcctctctaatttaatggtcaaaaaacactttcccgtggtgggaaactctttcctcttcccaccctaaatgccacc 38320420  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 32449456 - 32449346
Alignment:
Q  34 gaagaatatggtgaaagagaaagcaaaataatcaagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttccca 133  Q
    |||||| ||||||||||||||||  ||| |||  |||||||| | ||||| |||||||  |||||||| ||||||||||| ||||| ||  | ||| |||    
T  32449456 gaagaaaatggtgaaagagaaagagaaaaaatatagtgtggatagaccatgataaaattggtattcctctttaatctaattgtcaaaaaatatttttcca 32449357  T
Q  134 tagtgggaaac 144  Q
    | |||||||||    
T  32449356 tggtgggaaac 32449346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 38321280 - 38321346
Alignment:
Q  103 tttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgc 169  Q
    ||||||||||||||||| ||  ||||||| ||| ||||||||||||  || ||||||||||||||||    
T  38321280 tttaatctaatggtcaaaaatcactttcctataatgggaaactcttttcccttcccaccctaaatgc 38321346  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 24472588 - 24472656
Alignment:
Q  106 aatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    |||||||||||||| ||| | ||||  |  ||||||||||||| || ||||||||||||||||||||||    
T  24472588 aatctaatggtcaaaaactattttcttacggtgggaaactctttcctattcccaccctaaatgccacct 24472656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 32894644 - 32894748
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatg 168  Q
    ||||||||| |||||  ||||||||||   ||| |||||||| ||||| || || |||| ||||||||| |||||||||| |||   |||| ||||||||    
T  32894644 gtgtggacagaccattttaaaatctgtgcacctctttaatcttatggtaaaaaaaaactctcccatagtaggaaactctttccctcacccatcctaaatg 32894743  T
Q  169 ccacc 173  Q
    |||||    
T  32894744 ccacc 32894748  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 17978333 - 17978263
Alignment:
Q  103 tttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||||||||||||  || || |||||||||||  |||||||||||| |||   ||||||||||||||||||    
T  17978333 tttaatctaatggctaaaaataactttcccatgttgggaaactctttcccccgcccaccctaaatgccacc 17978263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 37142690 - 37142760
Alignment:
Q  103 tttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||||||||||||  || || |||||||||||  |||||||||||| |||   ||||||||||||||||||    
T  37142690 tttaatctaatggctaaaaataactttcccatgttgggaaactctttcccccacccaccctaaatgccacc 37142760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 49346211 - 49346101
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaa-caactttcccatagtgggaaactcttccccattcccaccctaaat 167  Q
    ||||||| | ||||| |||||||| ||  |||  |||||||||||||| || || ||||||||||||  ||| ||| |||| |||   ||||||||||||    
T  49346211 gtgtggatagaccatgataaaatcagtgctccaatttaatctaatggtaaacaatcaactttcccatgatggaaaattctttccctcacccaccctaaat 49346112  T
Q  168 gccacctactt 178  Q
    |||||||||||    
T  49346111 gccacctactt 49346101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 49708685 - 49708775
Alignment:
Q  85 ataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccaccta 175  Q
    ||||||||| | ||||| ||||||||||||| ||  | | ||||| |||| |||||||| |||| |||   ||||||||||||||||||||    
T  49708685 ataaaatctatgttcctctttaatctaatgggcataatctacttttccatggtgggaaattctttccctcacccaccctaaatgccaccta 49708775  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 55879889 - 55879793
Alignment:
Q  79 accatcataaaatctgtattcctttttaatctaatggtcaagaa-caactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    ||||| |||||||| ||| |||  |||||||||| ||| || || |||||||||||| |||||||| | || |||   |||||||||||||||||||    
T  55879889 accatgataaaatcagtactccactttaatctaacggtaaacaaacaactttcccatggtgggaaattatttccctcacccaccctaaatgccacct 55879793  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 4124769 - 4124701
Alignment:
Q  104 ttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccac 172  Q
    |||||||||||||||  || ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4124769 ttaatctaatggtcagaaaaaactttcccatagtgggaaactctttcccattcccaccctaaatgccac 4124701  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 51977180 - 51977246
Alignment:
Q  107 atctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||| ||||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  51977180 atctgatggtcatgaacaactttcccatagtggaaaactctttcccatttccaccctaaatgccacc 51977246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 4125407 - 4125465
Alignment:
Q  115 gtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||||||  |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  4125407 gtcaagattaactttcctatagtgggaaactctttcccattcccaccctaaatgccacc 4125465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 51610164 - 51610270
Alignment:
Q  68 agtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaat 167  Q
    |||||| |||| |||| |||||||| |||||||| | ||||||| ||||  | || ||||||||||| |||||||| | |||| | | ||||||||||||    
T  51610164 agtgtgcacaacccatgataaaatcagtattcctctctaatctagtggtataaaaaaactttcccatggtgggaaaatattcctcctacccaccctaaat 51610263  T
Q  168 gccacct 174  Q
    |||||||    
T  51610264 gccacct 51610270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 51129477 - 51129372
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatg 168  Q
    ||||||| | |||||  ||||||||||   ||| |||||||| ||||| |  || ||||||||||||||||||||||||| |||   |||||||||||||    
T  51129477 gtgtggagagaccattttaaaatctgtgcacctctttaatcttatggtaagaaaaaactttcccatagtgggaaactctttccctcacccaccctaaatg 51129378  T
Q  169 ccacct 174  Q
    ||||||    
T  51129377 ccacct 51129372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 29152292 - 29152355
Alignment:
Q  68 agtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcc 131  Q
    |||||||||||||||||||||||||| || |||| ||||||| ||||||||  || ||||||||    
T  29152292 agtgtggacaaaccatcataaaatctataatcctatttaatccaatggtcataaaaaactttcc 29152355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 11032198 - 11032268
Alignment:
Q  104 ttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    ||||||||||||||||   |||||||||||| |||||||||| |||||| ||||||   ||||||||||||    
T  11032198 ttaatctaatggtcaaattcaactttcccatggtgggaaactattcccctttcccatgttaaatgccacct 11032268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 49961460 - 49961528
Alignment:
Q  104 ttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccac 172  Q
    |||||||||| ||||  || |||||| ||||||| | ||||||||  ||||||||||||||||||||||    
T  49961460 ttaatctaattgtcagaaaaaacttttccatagtagaaaactcttttccattcccaccctaaatgccac 49961528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 15374695 - 15374746
Alignment:
Q  123 caactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    |||||| ||||| |||||||| |||| ||| |||||||||||||||||||||    
T  15374695 caacttgcccatggtgggaaaatctttccccttcccaccctaaatgccacct 15374746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 49420188 - 49420113
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaac 144  Q
    ||||||||| ||||||||||||| |||   ||| ||||||||||||||||| || | |||||||||  ||||||||    
T  49420188 gtgtggacagaccatcataaaatgtgtgcacctatttaatctaatggtcaaaaaaagctttcccatcatgggaaac 49420113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 49960012 - 49959953
Alignment:
Q  115 gtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    |||||||  |||||||| ||||| |||||||||| | |||| ||||||||||||||||||    
T  49960012 gtcaagattaactttcctatagtaggaaactctttctcatttccaccctaaatgccacct 49959953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 3788481 - 3788435
Alignment:
Q  127 tttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||| || ||||||||||||| ||| ||||||||||||||||||||    
T  3788481 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 11426922 - 11426852
Alignment:
Q  104 ttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    |||||||||||||||| |  | ||||||||| ||||||||||||| ||| || |||  |||||||||||||    
T  11426922 ttaatctaatggtcaaaattagctttcccatggtgggaaactctttcccttttccatgctaaatgccacct 11426852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 11031500 - 11031431
Alignment:
Q  104 ttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||||||||||||||    ||||||||||| |||||||||| |||||| ||||||   |||||||||||    
T  11031500 ttaatctaatggtcaaatttaactttcccatggtgggaaactattcccctttcccatgttaaatgccacc 11031431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 3802729 - 3802860
Alignment:
Q  44 gtgaaagagaaagcaaaataatcaagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaa 143  Q
    ||||||||||||| || | |||  |||||||| | ||||| |||||||| || ||||||| |||| |||||||  | || || |||||||||||| ||||    
T  3802729 gtgaaagagaaaggaagaaaatatagtgtggaaagaccatgataaaatcagtgttcctttctaatttaatggtataaaataagtttcccatagtgagaaa 3802828  T
Q  144 ctcttccccattcccaccctaaatgccaccta 175  Q
     |||| ||||||||||||||||||||||||||    
T  3802829 ttctttcccattcccaccctaaatgccaccta 3802860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 3802193 - 3802063
Alignment:
Q  44 gtgaaagagaaagcaaaataatcaagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaa 143  Q
    ||||||||||||| |||| |||  ||||| || | ||||| |||||||   | |||||| ||||||||||| |  | ||||||||| |||||||| ||||    
T  3802193 gtgaaagagaaaggaaaaaaatatagtgtagaaagaccatgataaaattaatgttccttcttaatctaatgatgtaaaacaacttttccatagtgtgaaa 3802094  T
Q  144 ctcttccccattcccaccctaaatgccacct 174  Q
    ||||| ||| |||||||||||||||||||||    
T  3802093 ctctttcccgttcccaccctaaatgccacct 3802063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 1528665 - 1528561
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatg 168  Q
    ||||||| | |||||  ||||||||||   ||| |||||||| ||||| |  || ||||||||||||||||||||||||| |||   |||||||||||||    
T  1528665 gtgtggatagaccattttaaaatctgtgcacctctttaatcttatggtaagaaaaaactttcccatagtgggaaactctttccctcacccaccctaaatg 1528566  T
Q  169 ccacc 173  Q
    |||||    
T  1528565 ccacc 1528561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 1529372 - 1529457
Alignment:
Q  86 taaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgcca 171  Q
    ||||||||||   ||| |||||||| |||||||  || ||||||| ||| ||||||||||||| |||   ||||||||||||||||    
T  1529372 taaaatctgtgcacctatttaatcttatggtcagaaaaaactttctcatggtgggaaactctttccctcacccaccctaaatgcca 1529457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 1282946 - 1283015
Alignment:
Q  104 ttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||||||||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  1282946 ttaatctaatggtcagaaaaaactttcccatagtgggaaactctttcccattcccaccctaaatgtcacc 1283015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 1282312 - 1282254
Alignment:
Q  115 gtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1282312 gtcaagattaactttcccatagtgggaaactctttcccattcccaccctaaatgccacc 1282254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 39949597 - 39949490
Alignment:
Q  68 agtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaat 167  Q
    |||||| |||| |||| |||||||| ||| |||| | ||||||||||||  | || |||||| ||||||||| |||||||| |||   ||||||||||||    
T  39949597 agtgtgcacaacccatgataaaatcagtactcctctctaatctaatggtataaaaaaacttttccatagtggaaaactctttccctcacccaccctaaat 39949498  T
Q  168 gccaccta 175  Q
    ||||||||    
T  39949497 gccaccta 39949490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 42310886 - 42310849
Alignment:
Q  136 gtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  42310886 gtgggaaactctttcccattcccaccctaaatgccacc 42310849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 6903210 - 6903277
Alignment:
Q  67 aagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccat 134  Q
    |||||||| || ||||||||||||||| || |||| |||||||||||| | || || |||||||||||    
T  6903210 aagtgtgggcagaccatcataaaatctatactcctctttaatctaatgataaaaaaaaactttcccat 6903277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 39950311 - 39950382
Alignment:
Q  103 tttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    |||||||||||||  || || |||||||||||  |||||||||||| |||   |||||||||||||||||||    
T  39950311 tttaatctaatggctaaaaataactttcccatgttgggaaactctttcccccgcccaccctaaatgccacct 39950382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 4789586 - 4789549
Alignment:
Q  107 atctaatggtcaagaacaactttcccatagtgggaaac 144  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  4789586 atctaatggtcaagaataactttcccatggtgggaaac 4789549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 30003538 - 30003614
Alignment:
Q  97 ttcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||| ||| ||||||||||||| | |||||||   || || |||||||||| ||| | ||||||||||||||||||    
T  30003538 ttcctatttgatctaatggtcaaaatcaacttttttatggtaggaaactctttcccttacccaccctaaatgccacc 30003614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 39149423 - 39149487
Alignment:
Q  79 accatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaa 143  Q
    ||||||||||||||| | ||| | | |||||||||||| || || ||||||||||| ||||||||    
T  39149423 accatcataaaatctatgttcatctctaatctaatggtaaaaaaaaactttcccatggtgggaaa 39149487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 41784726 - 41784622
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatg 168  Q
    ||||||| | |||||  ||||||||||   ||| |||||||| ||||| |  || |||||||||||||| | |||||||| |||   |||||||||||||    
T  41784726 gtgtggagagaccattttaaaatctgtgcacctctttaatcttatggtaagaaaaaactttcccatagtagaaaactctttccctcacccaccctaaatg 41784627  T
Q  169 ccacc 173  Q
    |||||    
T  41784626 ccacc 41784622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 5505153 - 5505268
Alignment:
Q  58 aaaataatcaagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcc 157  Q
    ||||||||  |||||| |||| |||| || ||||| ||| |||| | ||||||||||||||| ||  |||||||||| |||| |||||||| ||  ||||    
T  5505153 aaaataatatagtgtgcacaacccatgatgaaatcggtactcctctctaatctaatggtcaaaaaacactttcccatggtggaaaactctttcctcttcc 5505252  T
Q  158 caccctaaatgccacc 173  Q
    ||||||||||||||||    
T  5505253 caccctaaatgccacc 5505268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 5504410 - 5504344
Alignment:
Q  107 atctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||||||||||| ||  ||||| | |||||||||||||||| ||| ||||||||||||||||||||    
T  5504410 atctaatggtcaaaaatcacttttctatagtgggaaactctttccccttcccaccctaaatgccacc 5504344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 2992798 - 2992903
Alignment:
Q  68 agtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaat 167  Q
    |||||| |||| |||| |||||||| ||| |||| | ||||||||||||  | || |||||| ||||||||| |||||||| |||   ||||||||||||    
T  2992798 agtgtgcacaacccatgataaaatcagtactcctctctaatctaatggtataaaaaaacttttccatagtggaaaactctttccctcacccaccctaaat 2992897  T
Q  168 gccacc 173  Q
    ||||||    
T  2992898 gccacc 2992903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 30545379 - 30545454
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaac 144  Q
    ||||||||||||||||||||||| |||   ||| |||||||||||||| || || |||||||||||  ||||||||    
T  30545379 gtgtggacaaaccatcataaaatgtgtgcacctctttaatctaatggttaaaaaaaactttcccatcatgggaaac 30545454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 42946480 - 42946517
Alignment:
Q  136 gtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  42946480 gtgggaaactctttcccattcccaccctaaatgccacc 42946517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 6197991 - 6197915
Alignment:
Q  97 ttcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||| |||||| ||||||| || ||| ||||||||||| |||| || |||| ||| | ||||||||||||||||||    
T  6197991 ttcctatttaatttaatggttaaaaactactttcccataatggggaattctttcccttacccaccctaaatgccacc 6197915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 17947880 - 17947984
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatg 168  Q
    ||||||||| |||||  |||||||| |   ||| |||||||| ||||| || || |||| |||||||||||||||||||| |||   |||| ||||||||    
T  17947880 gtgtggacagaccattttaaaatctatgcacctctttaatcttatggtaaaaaaaaactctcccatagtgggaaactctttccctcacccatcctaaatg 17947979  T
Q  169 ccacc 173  Q
    |||||    
T  17947980 ccacc 17947984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 2992072 - 2992002
Alignment:
Q  103 tttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||||||||||||  || || |||||||||||  |||||||||||| |||   ||||||||||||||||||    
T  2992072 tttaatctaatggctaaaaataactttcccatgttgggaaactctttcccccgcccaccctaaatgccacc 2992002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 26021913 - 26021959
Alignment:
Q  127 tttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||| || ||||||||||||| ||| ||||||||||||||||||||    
T  26021913 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 8146599 - 8146664
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccat 134  Q
    ||||||||||||||||||||||| | |   ||| |||||||||||||| || || |||||||||||    
T  8146599 gtgtggacaaaccatcataaaatgtatgcacctctttaatctaatggttaaaaaaaactttcccat 8146664  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 34617722 - 34617682
Alignment:
Q  104 ttaatctaatggtcaagaacaactttcccatagtgggaaac 144  Q
    |||||||||||||||| || ||||||||||| |||||||||    
T  34617722 ttaatctaatggtcaaaaataactttcccatggtgggaaac 34617682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 29006487 - 29006377
Alignment:
Q  34 gaagaatatggtgaaagagaaagcaaaataatcaagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaac-aactttccc 132  Q
    |||||| ||||||||||||||||  ||| |||  |||||||| | ||||| |||||||  ||| |||| |||||||||||||| || ||| |||||||||    
T  29006487 gaagaagatggtgaaagagaaagagaaaaaatatagtgtggatagaccatgataaaattggtactcctctttaatctaatggttaaaaactaactttccc 29006388  T
Q  133 atagtgggaaa 143  Q
    || ||||||||    
T  29006387 atggtgggaaa 29006377  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 34996947 - 34996885
Alignment:
Q  103 tttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaa 165  Q
    |||||||||||| |||| ||  |||||||||||||||||||||||| | ||||||||||||||    
T  34996947 tttaatctaatgatcaaaaatcactttcccatagtgggaaactctttctcattcccaccctaa 34996885  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 25530377 - 25530423
Alignment:
Q  125 actttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25530377 actttcccatagtgggaaactct--cccattcccaccctaaatgccacc 25530423  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 29007106 - 29007217
Alignment:
Q  34 gaagaatatggtgaaagagaaagc-aaaataatcaagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaac-aactttcc 131  Q
    |||||| ||||||||||||||||  |||| |||  |||||||| | ||||| |||||||  ||| |||| |||||||||||||| || ||| ||||||||    
T  29007106 gaagaaaatggtgaaagagaaagagaaaaaaatatagtgtggatagaccatgataaaattagtactcctctttaatctaatggttaaaaactaactttcc 29007205  T
Q  132 catagtgggaaa 143  Q
    ||| ||||||||    
T  29007206 catggtgggaaa 29007217  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 34367466 - 34367361
Alignment:
Q  68 agtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaat 167  Q
    |||||| |||| |||| |||||||| ||| |||| | ||||||||||||  | || |||||| ||||||||| |||||||| |||   ||||||||||||    
T  34367466 agtgtgcacaacccatgataaaatcagtactcctctctaatctaatggtataaaa-aacttttccatagtggaaaactctttccctcacccaccctaaat 34367368  T
Q  168 gccacct 174  Q
    |||||||    
T  34367367 gccacct 34367361  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 34997674 - 34997764
Alignment:
Q  58 aaaataatcaagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactctt 148  Q
    ||||||||  |||||| |||| |||| ||||||||  || |||| | ||||||||||||||| ||  ||||||| ||||||||||||||||    
T  34997674 aaaataatatagtgtgcacaacccatgataaaatcgatactcctctctaatctaatggtcaaaaaacactttcctatagtgggaaactctt 34997764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 23633028 - 23632953
Alignment:
Q  67 aagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaa 143  Q
    |||||||| || ||||||||||||||| || |||| |||||||||||||| || || |||||| |||| ||||||||    
T  23633028 aagtgtgggcagaccatcataaaatctatactcctctttaatctaatggt-aaaaaaaacttttccatggtgggaaa 23632953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 9378779 - 9378728
Alignment:
Q  123 caactttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    |||||||||||| |||| ||| |||| ||| |||||||||||||||||||||    
T  9378779 caactttcccatggtggaaaaatctttccccttcccaccctaaatgccacct 9378728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 3820464 - 3820394
Alignment:
Q  103 tttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||||||| |||| || || |||||||| ||||| |||||||||| | | | ||||||||||||||||||    
T  3820464 tttaatctattggtaaaaaaaaactttcctatagtaggaaactctttcacctacccaccctaaatgccacc 3820394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 9379793 - 9379843
Alignment:
Q  123 caactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||||||||||||||| ||| |||| |||  |||||||||||||||||||    
T  9379793 caactttcccatagtggaaaaatctttccccatcccaccctaaatgccacc 9379843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 38315888 - 38315783
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatg 168  Q
    ||||||||| |||||  ||||||||||   | | |||||||| ||||| |  || |||||| ||||||| |||||||||| |||   |||||||||||||    
T  38315888 gtgtggacagaccattttaaaatctgtgcacttctttaatcttatggtaagaaaaaacttttccatagtaggaaactctttccctcacccaccctaaatg 38315789  T
Q  169 ccacct 174  Q
    ||||||    
T  38315788 ccacct 38315783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 41713069 - 41712964
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatg 168  Q
    ||||||| | |||||  ||||||||||   ||| |||||||| ||||| |  || ||||||||||||||| ||||||||| | |   |||||||||||||    
T  41713069 gtgtggagagaccattttaaaatctgtgcacctctttaatcttatggtaagaaaaaactttcccatagtgagaaactctttctctcacccaccctaaatg 41712970  T
Q  169 ccacct 174  Q
    ||||||    
T  41712969 ccacct 41712964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 12924148 - 12924224
Alignment:
Q  58 aaaataatcaagtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccat 134  Q
    ||||| || ||| |||| || ||||||||||||||| || |||| |||||| ||||||| || || |||||||||||    
T  12924148 aaaattataaagcgtgggcagaccatcataaaatctatactcctctttaatttaatggtaaaaaaaaactttcccat 12924224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 42607147 - 42607095
Alignment:
Q  107 atctaatggtcaagaacaactttcccatagtgggaaactcttccccattccca 159  Q
    ||||||||| ||| |||||||||||||| |||||||||  |||||| ||||||    
T  42607147 atctaatggacaaaaacaactttcccatggtgggaaacaattcccctttccca 42607095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 42146849 - 42146798
Alignment:
Q  123 caactttcccatagtgggaaactcttccccattcccaccctaaatgccaccta 175  Q
    |||||||||||| |||||||| |||| ||||| ||||||||||||||||||||    
T  42146849 caactttcccatggtgggaaaatctttcccat-cccaccctaaatgccaccta 42146798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 42147546 - 42147596
Alignment:
Q  123 caactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||||| ||||| |||||||| |||| ||| ||||||||||||||||||||    
T  42147546 caacttgcccatggtgggaaaatctttccccttcccaccctaaatgccacc 42147596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 50306525 - 50306571
Alignment:
Q  127 tttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||| || ||||||||||||| ||| ||||||||||||||||||||    
T  50306525 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 7359842 - 7359891
Alignment:
Q  125 actttcccatagtgggaaactcttccccattcccaccctaaatgccacct 174  Q
    |||||||||| |||||||| |||||| | | |||||||||||||||||||    
T  7359842 actttcccatggtgggaaagtcttcctcttacccaccctaaatgccacct 7359891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 1128170 - 1128274
Alignment:
Q  69 gtgtggacaaaccatcataaaatctgtattcctttttaatctaatggtcaagaacaactttcccatagtgggaaactcttccccattcccaccctaaatg 168  Q
    ||||||| | |||||  ||||||||||   ||| |||||||| ||||| |  || ||||||||||||||| ||||||||| | |   |||||||||||||    
T  1128170 gtgtggagagaccattttaaaatctgtgcacctctttaatcttatggtaagaaaaaactttcccatagtgagaaactctttctctcacccaccctaaatg 1128269  T
Q  169 ccacc 173  Q
    |||||    
T  1128270 ccacc 1128274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 23379380 - 23379332
Alignment:
Q  125 actttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    ||||||| ||||||||||| |||| ||| | ||||||||||||||||||    
T  23379380 actttcctatagtgggaaaatctttcccttacccaccctaaatgccacc 23379332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 53393212 - 53393256
Alignment:
Q  124 aactttcccatagtgggaaactcttccccattcccaccctaaatg 168  Q
    |||||||||||||||||||||||||| || ||||||  |||||||    
T  53393212 aactttcccatagtgggaaactcttctcctttcccatgctaaatg 53393256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 67297 - 67247
Alignment:
Q  123 caactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 173  Q
    |||||| ||||| |||||||| |||| ||| ||||||||||||||||||||    
T  67297 caacttgcccatggtgggaaaatctttccccttcccaccctaaatgccacc 67247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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