View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14826_low_6 (Length: 270)

Name: NF14826_low_6
Description: NF14826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14826_low_6
NF14826_low_6
[»] chr2 (6 HSPs)
chr2 (13-256)||(5768783-5769026)
chr2 (13-256)||(5829422-5829665)
chr2 (20-253)||(5827239-5827472)
chr2 (20-252)||(5794832-5795064)
chr2 (13-89)||(27562806-27562882)
chr2 (16-89)||(22142901-22142974)
[»] chr6 (2 HSPs)
chr6 (24-253)||(29326947-29327176)
chr6 (183-224)||(3426377-3426418)
[»] chr1 (2 HSPs)
chr1 (13-150)||(33815182-33815319)
chr1 (13-150)||(33874652-33874789)
[»] chr3 (1 HSPs)
chr3 (16-89)||(38508530-38508603)
[»] chr7 (1 HSPs)
chr7 (153-214)||(41174385-41174446)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 5769026 - 5768783
Alignment:
Q  13 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5769026 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagcccctcgaattgttgtaagacg 5768927  T
Q  113 gtgagccaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5768926 gtgagccaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcgtca 5768827  T
Q  213 agcaaaagtattttggggtttttcagcatggctcttgcaatagc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5768826 agcaaaagtattttggggtttttcagcatggctcttgcaatagc 5768783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 5829422 - 5829665
Alignment:
Q  13 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacg 112  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  5829422 catcagtaatcctcatcaactcatcatgtcttcccttttcagccaccgccccatttttaattaccgctatagtatcagcccctcgaattgttgtaagacg 5829521  T
Q  113 gtgagccaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatca 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5829522 gtgagctaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatca 5829621  T
Q  213 agcaaaagtattttggggtttttcagcatggctcttgcaatagc 256  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  5829622 agcaaaagtattttggggttttttagcatggttcttgcaatagc 5829665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 5827472 - 5827239
Alignment:
Q  20 aatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacggtgagcc 119  Q
    ||||||||||||||  |||||||| ||||| ||||| | |||||||||||| |  || || ||| ||||||| |||  ||| |||| |||||| ||||||    
T  5827472 aatcttcatcaacaaatcatgtctacccttctcagcaatcaccccatttttcactacagcgataatatcagcacctttaatcgttgcaagacgatgagcc 5827373  T
Q  120 accaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaa 219  Q
    || || |||||||||||||| ||||| |||||||||| |||||||||||||| ||| |||||||||||||| |||||||| || ||||||||||| ||||    
T  5827372 acaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacacgttctgactcagcatcgagtgcactggttgcctcatcaagtaaaa 5827273  T
Q  220 gtattttggggtttttcagcatggctcttgcaat 253  Q
    ||||| | ||||||||||  || |||||||||||    
T  5827272 gtattctagggtttttcaatatagctcttgcaat 5827239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 5795064 - 5794832
Alignment:
Q  20 aatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacggtgagcc 119  Q
    |||||||||||| |  |||||||| ||||| ||||  | |||||||||||| |  || |||||  ||||||| |||  ||| |||| |||||| ||||||    
T  5795064 aatcttcatcaataaatcatgtctacccttctcagtaatcaccccatttttcacaacagctatgatatcagcacctttaatcgttgcaagacgatgagcc 5794965  T
Q  120 accaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaa 219  Q
    || || |||||||||||||| ||||| |||||||||| |||||||||||||| | | |||||||||||||| |||||||| || ||||||||||| ||||    
T  5794964 acaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacatgttctgactcagcatcgagtgcactggttgcctcatcaagtaaaa 5794865  T
Q  220 gtattttggggtttttcagcatggctcttgcaa 252  Q
    ||||| | |||| |||||  || ||||||||||    
T  5794864 gtattctagggtctttcaatatagctcttgcaa 5794832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 27562882 - 27562806
Alignment:
Q  13 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatca 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  27562882 catcagtaatcttcatcaacacttcatgtcttcccttttcagccacctccccgtttttaatcacggctatagtatca 27562806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 22142901 - 22142974
Alignment:
Q  16 cagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatca 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  22142901 cagtaatcttcatcaacacttcatgtcttcccttttcagccacctccccatttttaattacggctatagtatca 22142974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 29326947 - 29327176
Alignment:
Q  24 ttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacggtgagccacca 123  Q
    ||||||||| | |||||||||||||||||||| |||| ||||||||| || || |||||||||||||| |||||||||||||||||||| |||||||| |    
T  29326947 ttcatcaactcatcatgtcttcccttttcagcaaccatcccattttttattactgctatagtatcagcgcctcgaattgttgtaagacgatgagccacga 29327046  T
Q  124 ccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtat 223  Q
      |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  29327047 tgacagtagttctgttcaaactcactctatctagagcctcttgaactatacgctctgactcggcatcaagtgcacttgttgcctcatcaagcaaaagtat 29327146  T
Q  224 tttggggtttttcagcatggctcttgcaat 253  Q
    ||| ||||||||||||||||||||||||||    
T  29327147 tttagggtttttcagcatggctcttgcaat 29327176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 3426377 - 3426418
Alignment:
Q  183 tcagcatcaagtgcacttgtcgcctcatcaagcaaaagtatt 224  Q
    ||||| ||||||||||||||||| |||||||| |||||||||    
T  3426377 tcagcgtcaagtgcacttgtcgcttcatcaagtaaaagtatt 3426418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 33815319 - 33815182
Alignment:
Q  13 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacg 112  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||  |||||||||||| || ||||||| ||| ||| ||||||||||||||||    
T  33815319 catcagtaatattcatcaacacttcatgtcttccctttttagccaccaccttatttttaatcaccgccatagtattagcccctagaattgttgtaagacg 33815220  T
Q  113 gtgagccaccaccacagtagttctgttcacactcactc 150  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  33815219 gtgaggcaccaccacagtagttctgttcacactcactc 33815182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 33874789 - 33874652
Alignment:
Q  13 catcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagctcctcgaattgttgtaagacg 112  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||  |||||||||||| || ||||||| ||| ||| ||||||||||||||||    
T  33874789 catcagtaatattcatcaacacttcatgtcttccctttttagccaccaccttatttttaatcaccgccatagtattagcccctagaattgttgtaagacg 33874690  T
Q  113 gtgagccaccaccacagtagttctgttcacactcactc 150  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  33874689 gtgaggcaccaccacagtagttctgttcacactcactc 33874652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 38508530 - 38508603
Alignment:
Q  16 cagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatagtatca 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38508530 cagtaatcttcatcaacacttcatgtcttcccttttcagccacctccccatttttaatcacggctatagtatca 38508603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 41174385 - 41174446
Alignment:
Q  153 tctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaag 214  Q
    ||||| ||||||||||||   | |||||| |||||||||||||||||||| ||||| |||||    
T  41174385 tctagcgcctcttgaactgatctctctgattcagcatcaagtgcacttgttgcctcgtcaag 41174446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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