View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14826_low_7 (Length: 203)

Name: NF14826_low_7
Description: NF14826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14826_low_7
NF14826_low_7
[»] chr1 (3 HSPs)
chr1 (1-203)||(1140614-1140817)
chr1 (24-79)||(32878666-32878720)
chr1 (26-79)||(9298524-9298576)
[»] chr3 (1 HSPs)
chr3 (25-79)||(40702404-40702458)
[»] chr2 (1 HSPs)
chr2 (32-79)||(7582207-7582254)
[»] chr8 (3 HSPs)
chr8 (24-66)||(25939764-25939805)
chr8 (23-60)||(977225-977262)
chr8 (25-53)||(10334157-10334185)
[»] chr7 (1 HSPs)
chr7 (24-70)||(31724599-31724644)
[»] chr4 (2 HSPs)
chr4 (25-58)||(7083926-7083959)
chr4 (24-57)||(52465475-52465508)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 1140817 - 1140614
Alignment:
Q  1 acataggacgaatttagagaggt-attttggatcaaaattgaccctaaatcatccatcttcgatagatcaagaagaagaaccgtagtgacaactaaggtt 99  Q
    ||||| || ||||||||| |||| ||||||| |||||||| ||  |||||||||||||||||| |||  ||||||||||| | |||||||||||||||||    
T  1140817 acatacgaagaatttagataggtgattttgggtcaaaattaactttaaatcatccatcttcgacagagaaagaagaagaaacatagtgacaactaaggtt 1140718  T
Q  100 tagaaagaagataacttattcagttttgtttaattgaattttcaatcaactgtcatcttaaatttaaatagaatttcatgtagttttcatttaggtgagt 199  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1140717 tagaaagaaaacaacttagtcagttttgtttaattgaattttcaatcaactgtcatcttaaatttaaatagaatttcatgtagttttcatttaggtgagt 1140618  T
Q  200 gatt 203  Q
    ||||    
T  1140617 gatt 1140614  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 32878720 - 32878666
Alignment:
Q  24 attttggatcaaaattgaccctaaatcatccatcttcgatagatcaagaagaagaa 79  Q
    ||||||| |||||||| ||||||||||| ||||||| ||||||| |||||||||||    
T  32878720 attttgggtcaaaattaaccctaaatcacccatctttgatagat-aagaagaagaa 32878666  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 9298524 - 9298576
Alignment:
Q  26 tttggatcaaaattgaccctaaatcatccatcttcgatagatcaagaagaagaa 79  Q
    ||||| |||||||||||||||||||| || ||||| ||||| ||||||||||||    
T  9298524 tttggttcaaaattgaccctaaatcacccttcttcaataga-caagaagaagaa 9298576  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 40702458 - 40702404
Alignment:
Q  25 ttttggatcaaaattgaccctaaatcatccatcttcgatagatcaagaagaagaa 79  Q
    ||||||||||||||||| | |||||||||| |||| ||||||||||| |||||||    
T  40702458 ttttggatcaaaattgatcataaatcatccctcttggatagatcaaggagaagaa 40702404  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 7582207 - 7582254
Alignment:
Q  32 tcaaaattgaccctaaatcatccatcttcgatagatcaagaagaagaa 79  Q
    |||||||||||||||||||| |||| |||| ||| |||||||||||||    
T  7582207 tcaaaattgaccctaaatcacccattttcggtaggtcaagaagaagaa 7582254  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 25939764 - 25939805
Alignment:
Q  24 attttggatcaaaattgaccctaaatcatccatcttcgataga 66  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  25939764 attttgggtcaaaattgaccctaaatca-ccatcttcgataga 25939805  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 977262 - 977225
Alignment:
Q  23 tattttggatcaaaattgaccctaaatcatccatcttc 60  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  977262 tattttgaatcaaaattgaccataaatcatccatcttc 977225  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 10334185 - 10334157
Alignment:
Q  25 ttttggatcaaaattgaccctaaatcatc 53  Q
    |||||||||||||||||||||||||||||    
T  10334185 ttttggatcaaaattgaccctaaatcatc 10334157  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 31724644 - 31724599
Alignment:
Q  24 attttggatcaaaattgaccctaaatcatccatcttcgatagatcaa 70  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  31724644 attttcgatcaaaattgaccttaaatcatccatctt-gatagatcaa 31724599  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 7083926 - 7083959
Alignment:
Q  25 ttttggatcaaaattgaccctaaatcatccatct 58  Q
    ||||||||||||||||||||||||| ||||||||    
T  7083926 ttttggatcaaaattgaccctaaattatccatct 7083959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 52465508 - 52465475
Alignment:
Q  24 attttggatcaaaattgaccctaaatcatccatc 57  Q
    ||||||| ||||||||||||||||||||||||||    
T  52465508 attttgggtcaaaattgaccctaaatcatccatc 52465475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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