View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14827_high_1 (Length: 520)
Name: NF14827_high_1
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 32002816 - 32003173
Alignment:
| Q |
10 |
catcatcaaagcaattattaatgggtaatttagagtaattagcactatacggttattgctcttgtaactatttaataacagtctagctttgtctattgtt |
109 |
Q |
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| T |
32002816 |
catcatcaaagcaattattaatgggtaatttagagtaattagcactatacggttattgcccttgtaactatttaataacagtctagctttgtctattgtt |
32002915 |
T |
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| Q |
110 |
taggggcttgtttgtcatgtattagcaaattttgtgattaaaaggtaaacttaatggtttccgtgacctatcctataatttatattcacatggtagatag |
209 |
Q |
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| T |
32002916 |
taggggcttgtttgtcacgtattagcaaattttgtgattaaaaggtaaacttaatggtttccgtgacctatcctataatttatattcacatggtagatag |
32003015 |
T |
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| Q |
210 |
tatatggtgtcacatctctttcatatgatggtcacgaatcacaaaacttttcaaattagattaccttatatgtaatatatatcacttacaaatggaaatt |
309 |
Q |
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| T |
32003016 |
tatatggtgtcacatctctttcatatgatagtcacgaatcacaaaacttttcaaattagattaccttatatgcaatatatatcacttacaaatggaaatt |
32003115 |
T |
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| Q |
310 |
aattaagctagctgatcattcaagagtttgtaacaaatagatttacccggtattccaa |
367 |
Q |
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| T |
32003116 |
aattaagctagctgatcattcaagagtttgtaacaaatagatttacccggtattccaa |
32003173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 503
Target Start/End: Original strand, 32003746 - 32003781
Alignment:
| Q |
468 |
aatacaccttaaatgtttctttaactaacccatata |
503 |
Q |
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| T |
32003746 |
aatacaccttaaatgtttctttaactaacccatata |
32003781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 410
Target Start/End: Original strand, 32003650 - 32003685
Alignment:
| Q |
375 |
aacttacattaacggtgtatatgaattaaattcatc |
410 |
Q |
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| T |
32003650 |
aacttacattaacgatgtatatgaattaaattcatc |
32003685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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