View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14827_high_11 (Length: 322)
Name: NF14827_high_11
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 43221731 - 43221444
Alignment:
| Q |
17 |
gattgatcgaagaatggtaaggcatgatttgcagttgtttctcagtatgtaatataattcatattgctaacatatatacttattaaatgttagagatcat |
116 |
Q |
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| T |
43221731 |
gattgatcgaagaatggtaaggcatgatttgcagttgtttctcagtatgtaatataattcatattgctaacatatatacttattaaatgttagagatcat |
43221632 |
T |
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| Q |
117 |
attggtgatgtgatattaaatttttacaagtcttactcttattcaactatgtcaaattcataaaatgacgagtcaacgcataattgaatgatacccaaaa |
216 |
Q |
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| T |
43221631 |
attggtgatgtgatattaaatttttacaagtcttactcttattcaactatgtcaaattcataaaatgacgagtcaacgcataattgaatgatacccaaaa |
43221532 |
T |
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| Q |
217 |
attttctatgcacatgattttaaatttaaacacttgaatatgaatttgggtgattttcaagaacttgcatacttaattatttgtttcc |
304 |
Q |
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| T |
43221531 |
aatttctatgcacatgattttaaatttaaacacttgaatatgaatttgggtgattttcaagaacttgcatacttaattatttgtttcc |
43221444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 43231149 - 43231095
Alignment:
| Q |
17 |
gattgatcgaagaatggtaaggcatgatttgcagttgtttctcagtatgtaatat |
71 |
Q |
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| T |
43231149 |
gattgatagaagaatggtaaggcataattttcaattgtttcacagtatgtaatat |
43231095 |
T |
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