View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14827_high_15 (Length: 247)
Name: NF14827_high_15
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_high_15 |
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| [»] chr8 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 46750 - 46993
Alignment:
| Q |
4 |
attatactaggcatatataagcaaggcgcaggttcaagtcatatcgcttcttgcttttaatttttcttctgtatattatatatannnnnnncnnnnnnnt |
103 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
46750 |
attatattaggcatatataagcaaggcgctggttcaagtcatatcgcttcttgcttttaatttttcttctgtatattatatatatttttgtcaaaaaaat |
46849 |
T |
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| Q |
104 |
gtccctgggaagacttgaaccggctcccccacgctacatttaaaagatcccaactagtggaactattgactactcacagatcctttctgaaatgatatat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
46850 |
gtccctgggaagacttgaaccggctcccccacgctacatttaaaagatcccaactggtggaactattgattacttgcagatcctttctgaaatgatatat |
46949 |
T |
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| Q |
204 |
tacattcttttttggcacccccaacaaaataacttaagatccgc |
247 |
Q |
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| T |
46950 |
tacattcttttttgacacccccaacaaaataacttaagatccgc |
46993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 24915812 - 24915755
Alignment:
| Q |
111 |
ggaagacttgaaccggctcccccacgctacatttaaaagatcccaactagtggaacta |
168 |
Q |
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| T |
24915812 |
ggaagaattgaaccggctcccccacgctacattttaaggaacccaaccactggaacta |
24915755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 24915705 - 24915669
Alignment:
| Q |
211 |
ttttttggcacccccaacaaaataacttaagatccgc |
247 |
Q |
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| T |
24915705 |
ttttttggcacccccaacaaaataactcaagatccgc |
24915669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 24915894 - 24915833
Alignment:
| Q |
26 |
aaggcgcaggttcaagtcatatcgcttcttgcttttaatttttcttctgtatattatatata |
87 |
Q |
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| T |
24915894 |
aaggcgcaggttcgagtcatactgcctcctacttttaatttttctactgtattttatatata |
24915833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 19362726 - 19362759
Alignment:
| Q |
214 |
tttggcacccccaacaaaataacttaagatccgc |
247 |
Q |
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| T |
19362726 |
tttggcacccccaacaaaataactcaagatccgc |
19362759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 25244886 - 25244919
Alignment:
| Q |
214 |
tttggcacccccaacaaaataacttaagatccgc |
247 |
Q |
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| T |
25244886 |
tttggcacccccaacaaaataagttaagatccgc |
25244919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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