View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14827_high_16 (Length: 237)
Name: NF14827_high_16
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 50967932 - 50967712
Alignment:
| Q |
1 |
tgtgaaactatcaagttttatttcttcgtcacatgccacatgcttcctttggtcgatcacaaagatatgttttttagacaaccgtgatttccttgattaa |
100 |
Q |
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| T |
50967932 |
tgtgaaactatcaagttttatttcttcgtcacatgccacatgcttcctttggttgatcacaaagatatgttttttagacaaccgtgatttccttgattaa |
50967833 |
T |
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| Q |
101 |
tcaactcaagccgtatgtccactgtcaaattattatcataaggtaccttattgaaacatcttacatacacagagtttgcctcattatctattttattaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50967832 |
tcaactcaagccgtatgtccactgtcaaattattatcataaggtaccttattgaaacatcttacatacacagagtttgcctcattatctattttattaaa |
50967733 |
T |
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| Q |
201 |
catatatgtgcagtgtgtatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
50967732 |
catatatgtgcagtgtgtatt |
50967712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 52629916 - 52629979
Alignment:
| Q |
84 |
gtgatttccttgattaatcaactcaagccgtatgtccactgtcaaattattatcataaggtacctt |
149 |
Q |
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||||||||||||||||||||||| ||| |||||||| | ||| ||||||| ||||||||||||| |
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| T |
52629916 |
gtgatttccttgattaatcaacttaag--ttatgtccattttcacattattaacataaggtacctt |
52629979 |
T |
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