View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14827_high_19 (Length: 227)
Name: NF14827_high_19
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_high_19 |
 | |
|
| [»] scaffold1157 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1157 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 914 - 1130
Alignment:
| Q |
1 |
cacttaagatatgctattaaaaatcattctgaattttcttcattctttttatgatctttgtttttgcagattaacttggtcacaaaagcgtatggatgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
914 |
cacttaagatatgctattaaaaatcattctgaattttcttc----tttttatgatctttgtttttgcagattaacttggtcacaaaagcgtatggatgct |
1009 |
T |
|
| Q |
101 |
tctttcctacctggtatgatgcttaactataaacaatcttcatttatcaatgcttaacttctattaattttcaagtatttatattttgcaacttttttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1010 |
tctttcctacctggtatgatgcttaactataaacaatcttcatttatcaatgcttaacttctattaattttcaagtatttatattttgcaacttttttag |
1109 |
T |
|
| Q |
201 |
aaataaatcagaataatgttg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1110 |
aaataaatcagaataatgttg |
1130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 16526636 - 16526493
Alignment:
| Q |
1 |
cacttaagatatgctattaaaaatcattctgaattttcttcattctttttatgatctttgtttttgcagattaacttggtcacaaaagcgtatggatgct |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16526636 |
cacttaagatatactattaaaaatcattcagaattttcttc----tttttatgatctttgtttttgcagattaacttggtcacaaaagcgtatggatgct |
16526541 |
T |
|
| Q |
101 |
tctttcctacctggtatgatgcttaactataaacaatcttcatttatc |
148 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||||| || |||||||| |
|
|
| T |
16526540 |
tctttcctaccgggtatgatgctcagctataaacagtcaacatttatc |
16526493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 16586688 - 16586593
Alignment:
| Q |
52 |
tgatctttgtttttgcagattaacttggtcacaaaagcgtatggatgcttctttcctacctggtatgatgcttaactataaacaatcttcatttat |
147 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||||||||||||| |||||||| |
|
|
| T |
16586688 |
tgatctttgttaatacagattaacttggtcacaaaagcgtatggatgcttctttcctaccaggtttgatcctcaactataaacaatcatcatttat |
16586593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 16518049 - 16518006
Alignment:
| Q |
65 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16518049 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcct |
16518006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 2624241 - 2624293
Alignment:
| Q |
65 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcctacctggtat |
117 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||||||||| || ||||| |
|
|
| T |
2624241 |
tgcagcttaacttggtcacaaaagaggatggatgcttctttcctcccaggtat |
2624293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University