View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14827_high_3 (Length: 469)
Name: NF14827_high_3
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 2021631 - 2022074
Alignment:
| Q |
19 |
agaatggacacggtaagaaaacgttgtcctgtttctagttatgagggattaattgaacttcagaggattgttcaaaggtttgaagataagacttacactt |
118 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
2021631 |
agaatggacacgttaagaaaacgtcttcctgtttctagttatgagggattaattgaacttcagaagattgctcaaaggtttgaagataagatttacactt |
2021730 |
T |
|
| Q |
119 |
ctgcgacaagcaaggtacattcattacgagtattgtgctgcctccactttcattcattgttactcatgaaactatgttgtattgtagtatatatcaatac |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2021731 |
ctgcgacaagcaaggtacattcattacgagtattgtgctgcctccactttcattgattgttactcatgaaattatgttgtattgtagtatatatcaatac |
2021830 |
T |
|
| Q |
219 |
agcctactgttgctgcctataacctatagaatagcagtcctaacaaccagttattctcattgtaactaactgaatcaaataagttagagggatttgacct |
318 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2021831 |
agcctactgttgctgcctataacctatagaatagcagtcctaagaaacagttgttctcattgtaactaactgaatcaaataagttagagggatttgacct |
2021930 |
T |
|
| Q |
319 |
ttatagatactaattatcatcacctaatcataaccaacttttgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactgtat |
418 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2021931 |
ttatagatactaattatcatcacgtaatcataaccaacttttgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactgtat |
2022030 |
T |
|
| Q |
419 |
tgaacaccgattatttaactcgatactggtgttccttcttttca |
462 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2022031 |
tgaacatcgattatttaactcgatactggtgttccttcttttca |
2022074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 1990069 - 1990500
Alignment:
| Q |
19 |
agaatggacacggtaagaaaacgttgtcctgtttctagttatgagggattaattgaacttcagaggattgttcaaaggtttgaagataagacttacactt |
118 |
Q |
| |
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|||||||||||| |||||||| | |||| ||||| ||| |||||||||| ||||||||| || | ||| |||||||||||||||||||| || ||| |
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| T |
1990069 |
agaatggacacgttaagaaaatatcatcctatttctggttctgagggattacttgaacttcggaagcttgctcaaaggtttgaagataagatctatactg |
1990168 |
T |
|
| Q |
119 |
ctgcgacaagcaaggtacattcattacgagtattgtgctgcctccactttcattcattgttactcatgaaactatgttgtattgtagtatatatcaatac |
218 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||| | |||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |
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| T |
1990169 |
atgcggcaagccaggtacattcattacgagtattgtgcagtctccactttcattcatggttattcgtgaaactatgttgtattgtagtatatatcaatac |
1990268 |
T |
|
| Q |
219 |
agcctactgttgctgcctataacctatagaatagcagtcctaacaaccagttattctcattgtaactaactgaatcaaataagttagagggatttgacct |
318 |
Q |
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|||||||| | |||| ||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
1990269 |
agcctactttagctgtgtataacctataaaataacagtcctaacaaacagttattctcattgtaacgaactgaatcaaataagttagagggatttgatc- |
1990367 |
T |
|
| Q |
319 |
ttatagatactaattatcatcacctaatcataaccaacttttgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactgtat |
418 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1990368 |
-----------aattatcatcacgtaatcataaccaacttttgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactatat |
1990456 |
T |
|
| Q |
419 |
tgaacaccgattatttaactcgatactggtgttccttcttttca |
462 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
1990457 |
tgaacatcgattatttaacttgatactggtgttccttcttttca |
1990500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 2035819 - 2036022
Alignment:
| Q |
19 |
agaatggacacggtaagaaaacgttgtcctgtttctagttatgagggattaattgaacttcagaggattgttcaaaggtttgaagataagacttacactt |
118 |
Q |
| |
|
||||||||||| ||||||||| | ||| |||||| ||| ||||||||| ||||||||| || ||||| |||||||||||||||||||| ||| ||| |
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|
| T |
2035819 |
agaatggacacattaagaaaacatcttcccgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactg |
2035918 |
T |
|
| Q |
119 |
ctgcgacaagcaaggtacattcattacgagtattgtgctgcctccactttcattcat--tgttactcatgaaactatgttgtattgtagtatatatcaat |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2035919 |
ctgcgacaagccaggtacattcattacgagtattgtgcagtctccactttcattcatggtgttactcatgaagctatgttgtattgtagtatatatcaat |
2036018 |
T |
|
| Q |
217 |
acag |
220 |
Q |
| |
|
|||| |
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|
| T |
2036019 |
acag |
2036022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 266 - 462
Target Start/End: Original strand, 2036020 - 2036195
Alignment:
| Q |
266 |
cagttattctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcataaccaacttttgatca |
365 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||| |
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|
| T |
2036020 |
cagttattctcattgtaacgaactgaatcaaataagttagagggatttgatc------------aattaccatcacgtaatcataaccaacttttgatca |
2036107 |
T |
|
| Q |
366 |
ataaagaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttcttttca |
462 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2036108 |
ataaagaatattcatattctcttt---------agcttaggtttctactatattgaacatcgattatttaactcgatactggtgttccttcttttca |
2036195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 2018999 - 2019313
Alignment:
| Q |
19 |
agaatggacacggtaagaaaacgttgtcctgtttctagttatgagggattaattgaacttcagaggattgttcaaaggtttgaagataagacttacactt |
118 |
Q |
| |
|
|||||||||||| |||||| || | |||||||||| ||| ||||||||| ||||||||| | ||| |||| ||||||||||||||| ||| |||| |
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|
| T |
2018999 |
agaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatactt |
2019098 |
T |
|
| Q |
119 |
ctgcgacaagcaaggtacattcattacgagtattgtgctgcctccactttcattcattgttactcatgaaactatgttgtattgtagtatatatcaatac |
218 |
Q |
| |
|
| ||||||||| ||||||||||||||| |||||||||| ||||||||| | |||||| ||||| |||| |||||||||||||| |||||| | |||| |
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|
| T |
2019099 |
ccgcgacaagccaggtacattcattaccagtattgtgcagcctccactcttattcatggttacgcatgctactatgttgtattgcagtataga--aatat |
2019196 |
T |
|
| Q |
219 |
agcctactgttgctgcctataacctatagaatagcagtcctaacaaccagttattctca-------ttgtaactaactgaatcaaataagttagagggat |
311 |
Q |
| |
|
|||||| ||| |||| |||| ||| ||||||| ||| || ||| | | || ||| | || |||||||||||||||||| |||||||||||| |
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|
| T |
2019197 |
agcctattgtagctgtgtatagcctgtagaataacagctctcacatctacctagtctaagagagatttctaactaactgaatcaaatcagttagagggat |
2019296 |
T |
|
| Q |
312 |
ttgacctttatagatac |
328 |
Q |
| |
|
||||||| |||| |||| |
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|
| T |
2019297 |
ttgacctctataaatac |
2019313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 393 - 462
Target Start/End: Complemental strand, 48204741 - 48204672
Alignment:
| Q |
393 |
aaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttcttttca |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
48204741 |
aaagatagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttccttcttttca |
48204672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 393 - 455
Target Start/End: Original strand, 2428286 - 2428348
Alignment:
| Q |
393 |
aaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttcctt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
2428286 |
aaagatagcttaggtttctactgtattgaacatcaattatttaactcgatactggtgttcctt |
2428348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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