View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14827_high_5 (Length: 416)
Name: NF14827_high_5
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 90 - 401
Target Start/End: Original strand, 35258578 - 35258889
Alignment:
| Q |
90 |
atttaaaaccatgtagcaacaacatctaatactagccaaattgtaatacaaaattggtttatgagaactcacccatcattgtccttcatgacaaggaaga |
189 |
Q |
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| T |
35258578 |
atttaaaaccatgtagcaacaacatctaatactagccaaattgtaatacataattggtttatgagaactcacccatcattgtccttcatgacaaggaaga |
35258677 |
T |
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| Q |
190 |
gaaactgtgcatagttagacagaagaagtgaattgtaaggtgcaagatttatatgctttttgtaataagcatcagttttctcatattcctcatattgatc |
289 |
Q |
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| T |
35258678 |
gaaactgtgcatagttagacagaagaagtgaattgtaaggtgcaagatttatatgctttttgtaataagcatcagttttctcatattcctcatattgatc |
35258777 |
T |
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| Q |
290 |
cccttcaatctccacagaaacaggactcagaaacttcatcattgtttcatgatccaaatcctcacccctcaattctctttgcatctttgaagcttcctcc |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35258778 |
cccttcaatctccacagaaacaggactcagaaacttcatcattgtttcatgatccaaatcctcacccctcaattctctttgtatctttgaagcttcctcc |
35258877 |
T |
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| Q |
390 |
aacataaaattc |
401 |
Q |
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|||||||||||| |
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| T |
35258878 |
aacataaaattc |
35258889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 35258464 - 35258556
Alignment:
| Q |
1 |
acagaacatggttttaattagcaggctgtaacaacaaaattgcaactacaatataaaggattttgaagtctatgaacagcttcaaccgcattt |
93 |
Q |
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| T |
35258464 |
acagaacatggttttaattagcaggctgtaacaacaaaattgcaactacaatataaaggattttgaagtctatgaacagcttcaaccgcattt |
35258556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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