View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14827_high_9 (Length: 327)

Name: NF14827_high_9
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14827_high_9
NF14827_high_9
[»] chr4 (8 HSPs)
chr4 (18-322)||(7281200-7281504)
chr4 (157-261)||(26252986-26253087)
chr4 (118-196)||(40443439-40443517)
chr4 (173-235)||(43148579-43148641)
chr4 (150-235)||(25554834-25554919)
chr4 (122-168)||(39466222-39466268)
chr4 (150-235)||(4787098-4787182)
chr4 (120-160)||(32303952-32303992)
[»] chr7 (7 HSPs)
chr7 (111-196)||(23284766-23284851)
chr7 (117-199)||(31877918-31878000)
chr7 (149-261)||(37586471-37586580)
chr7 (178-223)||(1295554-1295599)
chr7 (117-153)||(1326185-1326221)
chr7 (120-168)||(8116982-8117030)
chr7 (115-147)||(34328625-34328657)
[»] chr5 (6 HSPs)
chr5 (18-81)||(11135917-11135982)
chr5 (114-160)||(25994907-25994953)
chr5 (114-160)||(26093001-26093047)
chr5 (36-81)||(36192258-36192303)
chr5 (116-191)||(15233811-15233887)
chr5 (118-168)||(20419543-20419593)
[»] chr6 (5 HSPs)
chr6 (122-194)||(14028160-14028232)
chr6 (149-196)||(10378826-10378873)
chr6 (135-192)||(13944035-13944091)
chr6 (121-200)||(24359108-24359186)
chr6 (119-168)||(27982618-27982667)
[»] chr1 (6 HSPs)
chr1 (118-196)||(32306374-32306452)
chr1 (124-198)||(10884426-10884499)
chr1 (115-196)||(32306377-32306458)
chr1 (172-260)||(21258260-21258345)
chr1 (115-144)||(21761171-21761200)
chr1 (119-168)||(32713239-32713288)
[»] chr8 (6 HSPs)
chr8 (119-196)||(15909007-15909084)
chr8 (149-196)||(15892151-15892198)
chr8 (149-196)||(26218011-26218058)
chr8 (173-235)||(14998907-14998969)
chr8 (155-196)||(150901-150942)
chr8 (151-196)||(24618206-24618251)
[»] chr3 (3 HSPs)
chr3 (155-196)||(45003185-45003226)
chr3 (144-196)||(34366758-34366810)
chr3 (117-168)||(54336690-54336742)
[»] scaffold0015 (1 HSPs)
scaffold0015 (117-168)||(33506-33558)
[»] scaffold0012 (1 HSPs)
scaffold0012 (112-168)||(36145-36201)
[»] scaffold0010 (1 HSPs)
scaffold0010 (118-194)||(28605-28681)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 7281504 - 7281200
Alignment:
Q  18 aaaagatagacaaaaggaagagagaaccaaaaggtgagacttgagagcaggttaaacataattgnnnnnnntacaatacatgccgtcgtctttaaaacca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||    
T  7281504 aaaagatagacaaaaggaagagagaaccaaaaggtgagacttgagagcaggttaaacataattgaaaaaaatacaatacatgccgccgtctttaaaacca 7281405  T
Q  118 gcgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactcatgcataggtgtttttgaaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7281404 gcgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactcatgcataagtgtttttgaaatt 7281305  T
Q  218 tcagttgagaacgagcaattacgactgttgggtaaagagcagaactcaatgtttgatcaatggactaaaatagttggctcaactctgatcattaacttgc 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7281304 tcagttgggaacgagcaattacgactgttgggtaaagagcagaactcaatgtttgatcaatggactaaaatagttggctcaactctgatcattaacttgc 7281205  T
Q  318 ctatg 322  Q
    |||||    
T  7281204 ctatg 7281200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 26252986 - 26253087
Alignment:
Q  157 ttaaatcacgcatagattaacactagcgtgagttaactcatgcataggtgtttttgaaatttcagttgagaacgagcaattacgactgttgggtaaagag 256  Q
    |||| ||||||| ||||| ||||||||||||||||||||| ||| || | || |||  |||||||||| || |||||||||    ||||||| |||||||    
T  26252986 ttaattcacgcagagatttacactagcgtgagttaactcacgcagagatattattgtcatttcagttgggagcgagcaatt---tctgttggataaagag 26253082  T
Q  257 cagaa 261  Q
    |||||    
T  26253083 cagaa 26253087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 40443517 - 40443439
Alignment:
Q  118 gcgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    |||||||||||||| | || |||||||||| ||| | |||||||||||||| |||||||| |  | |||||||||||||    
T  40443517 gcgtgagttaactctcacaagtgttaattcatgcctgagttaaatcacgcagagattaactcatgtgtgagttaactca 40443439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 43148641 - 43148579
Alignment:
Q  173 ttaacactagcgtgagttaactcatgcataggtgtttttgaaatttcagttgagaacgagcaa 235  Q
    |||||||||||||||||||||||| ||| |||| ||||| |||||| ||||| ||| ||||||    
T  43148641 ttaacactagcgtgagttaactcacgcaaaggtatttttaaaattttagttgggaatgagcaa 43148579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 25554919 - 25554834
Alignment:
Q  150 gcgtaagttaaatcacgcatagattaacactagcgtgagttaactcatgcataggtgtttttgaaatttcagttgagaacgagcaa 235  Q
    |||| |||||| ||||||||| |||||||| ||||||| |||||||| |||| ||| || |||   ||| ||||||||||||||||    
T  25554919 gcgtgagttaagtcacgcatatattaacaccagcgtgacttaactcacgcatgggtattattgtctttttagttgagaacgagcaa 25554834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 39466222 - 39466268
Alignment:
Q  122 gagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgca 168  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||||    
T  39466222 gagttaactcacgcatgtgttaatggttgcgcaagttaactcacgca 39466268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 4787182 - 4787098
Alignment:
Q  150 gcgtaagttaaatcacgcatagattaacactagcgtgagttaactcatgcataggtgtttttgaaatttcagttgagaacgagcaa 235  Q
    |||| |||||| |||||||||  |||||| || ||||||||||||||||||   || ||||||||||| || ||||||| ||||||    
T  4787182 gcgtgagttaagtcacgcatat-ttaacaataacgtgagttaactcatgcaggagtatttttgaaattgcacttgagaatgagcaa 4787098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 32303992 - 32303952
Alignment:
Q  120 gtgagttaactcacgcatgtgttaattcttgcgtaagttaa 160  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  32303992 gtgagttaactcacacatgtgttaattcctgcgtgagttaa 32303952  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 23284766 - 23284851
Alignment:
Q  111 aaaaccagcgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    |||||||||||||||||||||||||| ||||||||||  |||| |||||||||| ||| ||||||||||  |||||||||||||||    
T  23284766 aaaaccagcgtgagttaactcacgcaggtgttaattccagcgtgagttaaatcatgcagagattaacacatgcgtgagttaactca 23284851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 31877918 - 31878000
Alignment:
Q  117 agcgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactcatgc 199  Q
    ||||||||||||||||||||||||||||  | ||||| |||||| ||||||||   |||||||  ||||||||||||||||||    
T  31877918 agcgtgagttaactcacgcatgtgttaacacctgcgtgagttaactcacgcatgtgttaacacctgcgtgagttaactcatgc 31878000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 37586471 - 37586580
Alignment:
Q  149 tgcgtaagttaaatcacgcatagattaacactagcgtgagttaactcatgcataggtgtttttgaaatttcagttgagaacgagcaattacgactgttgg 248  Q
    ||||| || ||| ||||||| |||||||||||| |||||| ||||||| | || | | |||||| ||||||||||| || |||||||||    |||||||    
T  37586471 tgcgtgagctaactcacgcagagattaacactaacgtgagctaactcacgtatggatatttttggaatttcagttgggagcgagcaatt---tctgttgg 37586567  T
Q  249 gtaaagagcagaa 261  Q
     ||||||||||||    
T  37586568 ataaagagcagaa 37586580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 1295554 - 1295599
Alignment:
Q  178 actagcgtgagttaactcatgcataggtgtttttgaaatttcagtt 223  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||    
T  1295554 actagcgtgagttaactcatgcaggggtatttttgaaatttcagtt 1295599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 1326221 - 1326185
Alignment:
Q  117 agcgtgagttaactcacgcatgtgttaattcttgcgt 153  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  1326221 agcgtgagttaactcaagcatgtgttaattgttgcgt 1326185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 8117030 - 8116982
Alignment:
Q  120 gtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgca 168  Q
    ||||||||| ||||| |||||||||||||| ||| |||||| |||||||    
T  8117030 gtgagttaagtcacgtatgtgttaattcttacgtgagttaactcacgca 8116982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 34328657 - 34328625
Alignment:
Q  115 ccagcgtgagttaactcacgcatgtgttaattc 147  Q
    |||||||||||||||||||||| ||||||||||    
T  34328657 ccagcgtgagttaactcacgcaagtgttaattc 34328625  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 11135982 - 11135917
Alignment:
Q  18 aaaagatagacaaaaggaa--gagagaaccaaaaggtgagacttgagagcaggttaaacataattg 81  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||||||||| ||||||||||    
T  11135982 aaaagatagacagaaggaaaagagagaaccaaaaggtgagacttgagagcaggttgaacataattg 11135917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 25994907 - 25994953
Alignment:
Q  114 accagcgtgagttaactcacgcatgtgttaattcttgcgtaagttaa 160  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||||||    
T  25994907 accagcgtgagttaactcacgcaagtgttaattctcgcgtgagttaa 25994953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 26093001 - 26093047
Alignment:
Q  114 accagcgtgagttaactcacgcatgtgttaattcttgcgtaagttaa 160  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||||    
T  26093001 accagcgtgacttaactcacgcacgtgttaattcctgcgtaagttaa 26093047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 36192303 - 36192258
Alignment:
Q  36 agagagaaccaaaaggtgagacttgagagcaggttaaacataattg 81  Q
    ||||||| |||| |||||||||||||||||||||| ||||||||||    
T  36192303 agagagagccaataggtgagacttgagagcaggttgaacataattg 36192258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 15233811 - 15233887
Alignment:
Q  116 cagcgtgagttaactcacgcatgtgtta-attcttgcgtaagttaaatcacgcatagattaacactagcgtgagtta 191  Q
    ||||||||||||| ||||| |||||||| |  ||||||||| |||| |||||||| |||||||||  ||||||||||    
T  15233811 cagcgtgagttaagtcacgtatgtgttatacacttgcgtaacttaactcacgcatggattaacacctgcgtgagtta 15233887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 20419593 - 20419543
Alignment:
Q  118 gcgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgca 168  Q
    ||||||||||||||||||| ||||||||||  |||| |||||| |||||||    
T  20419593 gcgtgagttaactcacgcaagtgttaattccagcgtgagttaactcacgca 20419543  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 14028232 - 14028160
Alignment:
Q  122 gagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaact 194  Q
    ||||||||| ||||| |||||||||| ||||| |||||| ||||| | |||||||||||||||||||||||||    
T  14028232 gagttaacttacgcaggtgttaattcctgcgtgagttaagtcacgtagagattaacactagcgtgagttaact 14028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 10378826 - 10378873
Alignment:
Q  149 tgcgtaagttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  10378826 tgcgtgagttaaatcacgcatagatttacactagcgtgagttaactca 10378873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 13944091 - 13944035
Alignment:
Q  135 catgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaa 192  Q
    ||||||||||||| ||||| |||||| ||||| | |||||||||||||||||||||||    
T  13944091 catgtgttaattcctgcgtgagttaa-tcacgtagagattaacactagcgtgagttaa 13944035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 24359186 - 24359108
Alignment:
Q  121 tgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactcatgca 200  Q
    ||||||||||||| |  ||||||| ||| |||| | |||| ||||| | ||||| |||||||||||||||||||||||||    
T  24359186 tgagttaactcacactagtgttaaatct-gcgtgacttaactcacgtagagatttacactagcgtgagttaactcatgca 24359108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 27982667 - 27982618
Alignment:
Q  119 cgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgca 168  Q
    ||||||||||||||| |||||||||||   |||||||||||| |||||||    
T  27982667 cgtgagttaactcacacatgtgttaatggctgcgtaagttaactcacgca 27982618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 32306374 - 32306452
Alignment:
Q  118 gcgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    ||||||||||||||||||||||||||| |  |||| || |||| ||||||  | ||||||||| |||||||||||||||    
T  32306374 gcgtgagttaactcacgcatgtgttaaattatgcgcaacttaactcacgctgaaattaacacttgcgtgagttaactca 32306452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 10884499 - 10884426
Alignment:
Q  124 gttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactcatg 198  Q
    ||||||||||||  ||||||| | |||||| |||||| ||||||| ||||| ||||||| |||||||||||||||    
T  10884499 gttaactcacgctagtgttaaat-ttgcgtgagttaactcacgcagagatttacactagagtgagttaactcatg 10884426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 32306458 - 32306377
Alignment:
Q  115 ccagcgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    |||||||||||||||||||||| |||||||||   |||| |||||| |  ||||||  |||||||  |||||||||||||||    
T  32306458 ccagcgtgagttaactcacgcaagtgttaatttcagcgtgagttaagttgcgcataatttaacacatgcgtgagttaactca 32306377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 21258345 - 21258260
Alignment:
Q  172 attaacactagcgtgagttaactcatgcataggtgtttttgaaatttcagttgagaacgagcaattacgactgttgggtaaagagcaga 260  Q
    ||||||||| ||||||||||||||| ||| |||| |||| | || |||||||| ||  |||||||    ||||||||||||||||||||    
T  21258345 attaacacttgcgtgagttaactcacgcagaggtattttgggaagttcagttgggatagagcaat---aactgttgggtaaagagcaga 21258260  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 21761200 - 21761171
Alignment:
Q  115 ccagcgtgagttaactcacgcatgtgttaa 144  Q
    ||||||||||||||||||||||||||||||    
T  21761200 ccagcgtgagttaactcacgcatgtgttaa 21761171  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 32713288 - 32713239
Alignment:
Q  119 cgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgca 168  Q
    |||||||||||||||||| ||||||||| | |||| |||||| |||||||    
T  32713288 cgtgagttaactcacgcaagtgttaattttagcgtgagttaactcacgca 32713239  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 15909084 - 15909007
Alignment:
Q  119 cgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    |||||||||||||||| ||||||||||| |||| | |||||  ||||  | ||||||| |||||||||| ||||||||    
T  15909084 cgtgagttaactcacgtatgtgttaatttttgcatgagttaggtcacagagagattaatactagcgtgacttaactca 15909007  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 15892198 - 15892151
Alignment:
Q  149 tgcgtaagttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    ||||| |||||| ||||||| |||||||||||| ||||||||||||||    
T  15892198 tgcgttagttaactcacgcagagattaacactaacgtgagttaactca 15892151  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 26218058 - 26218011
Alignment:
Q  149 tgcgtaagttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    ||||| |||||| ||||||| |||||||||||||| ||||||||||||    
T  26218058 tgcgtgagttaactcacgcagagattaacactagcatgagttaactca 26218011  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 14998907 - 14998969
Alignment:
Q  173 ttaacactagcgtgagttaactcatgcataggtgtttttgaaatttcagttgagaacgagcaa 235  Q
    ||||||||| |||||||||||||| |||| |||  |||||| |||||||||| ||| ||||||    
T  14998907 ttaacactaacgtgagttaactcacgcatgggtaattttgacatttcagttgggaatgagcaa 14998969  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 150901 - 150942
Alignment:
Q  155 agttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    |||||||||||||| ||||  |||||||||||||||||||||    
T  150901 agttaaatcacgcaaagatatacactagcgtgagttaactca 150942  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 24618206 - 24618251
Alignment:
Q  151 cgtaagttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    ||||| |||| ||||||| |||| ||||||||||||||||||||||    
T  24618206 cgtaacttaagtcacgcagagatgaacactagcgtgagttaactca 24618251  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 45003185 - 45003226
Alignment:
Q  155 agttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    |||||| ||||| | |||||||||||||||||||||||||||    
T  45003185 agttaactcacgtagagattaacactagcgtgagttaactca 45003226  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 34366810 - 34366758
Alignment:
Q  144 attcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaactca 196  Q
    |||| ||||| | |||| ||||||| ||||||||||||| |||||||||||||    
T  34366810 attcatgcgtgaattaactcacgcagagattaacactagagtgagttaactca 34366758  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 54336690 - 54336742
Alignment:
Q  117 agcgtgagttaactcacgcatgtgttaattct-tgcgtaagttaaatcacgca 168  Q
    ||||||||||||||||||||||||||||  || ||||| |||||| |||||||    
T  54336690 agcgtgagttaactcacgcatgtgttaacactatgcgtcagttaactcacgca 54336742  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 33506 - 33558
Alignment:
Q  117 agcgtgagttaactcacgcatgtgttaattct-tgcgtaagttaaatcacgca 168  Q
    ||||||||||||||||||||||||||||  || ||||| |||||| |||||||    
T  33506 agcgtgagttaactcacgcatgtgttaacgctctgcgtgagttaactcacgca 33558  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 36145 - 36201
Alignment:
Q  112 aaaccagcgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgca 168  Q
    |||||||| |||||||||||||||| ||||||||||  |||| |||||  |||||||    
T  36145 aaaccagcatgagttaactcacgcacgtgttaattccagcgtgagttagctcacgca 36201  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 28681 - 28605
Alignment:
Q  118 gcgtgagttaactcacgcatgtgttaattcttgcgtaagttaaatcacgcatagattaacactagcgtgagttaact 194  Q
    ||||||||||||| ||||||||||||||   ||||| |||||| | |||||||  || ||||| |||| ||||||||    
T  28681 gcgtgagttaactaacgcatgtgttaatggctgcgttagttaactaacgcataattttacacttgcgttagttaact 28605  T

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