View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14827_low_12 (Length: 302)
Name: NF14827_low_12
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 10805424 - 10805142
Alignment:
| Q |
5 |
gagagatgaaggaggtgagtatgggaaaaaagagctcttcacataaacctacaatacataacaaagtattagaaaataatgttatagcaaatacatggta |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10805424 |
gagagacgaaggaggtgagtatgggaaaaaagagctcttcacataaacctacaatacataggaaagtattagaaaataatgttatagcaaatacatggta |
10805325 |
T |
|
| Q |
105 |
acggtacctatatacatactagatttgaaaccttttgtccaatatagcactgacacttcatattgaaggtgtattaagtttttgacttgtatgaatgtca |
204 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
10805324 |
acggtatctatatacatactagatttgaaaccttttgtccaatatagcactgacacttcatattgaaggtgtattaagtttctgacttgtatcaatgtca |
10805225 |
T |
|
| Q |
205 |
gacaccaacacgacactaacatatataattaactattactggtgtgcatgcatgtgagtctcacttcctaaatatgtcttcgt |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| |
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| T |
10805224 |
gacaccaacacgacactaacatatataattaactattactagtgtgcatgcgtgtgagtctcacttcctaaaaatgtcttcgt |
10805142 |
T |
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