View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14827_low_13 (Length: 278)
Name: NF14827_low_13
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_low_13 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 278
Target Start/End: Complemental strand, 9354946 - 9354679
Alignment:
| Q |
12 |
attattcttacaagcatgtctatctttcaatcccttttatctttcttagcattacctgcttcaaagtcaaagtcaaccaaatggttaagggttgaaaaac |
111 |
Q |
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| T |
9354946 |
attattgttacaagcatgtctatctttcaatcccttttatctttcttagcattacctgcttcaaagtcgaagtcaaccaaatggttaagggttgaaaaac |
9354847 |
T |
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| Q |
112 |
ttatgcatatatgtgaaa-taacttggagaatttcaatgagttaagagcaacactagaagtggcttagacgcctcatctttagcaactatattaagagct |
210 |
Q |
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| T |
9354846 |
ttatgcatatatgtgaaaataacttggagaatttcaatgagttaagagcaacactagaagtggcttggacgcctcatctttagcaactatattaagagct |
9354747 |
T |
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| Q |
211 |
acaaagatcttaaaattgaattaagagcaacactagaagtgacttggacgcctcatctttagcaacta |
278 |
Q |
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| T |
9354746 |
acaaagatcttaaaattgaattaggatcaacactagaagtggcttggacgcctcatctttagcaacta |
9354679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 9307678 - 9307580
Alignment:
| Q |
15 |
attcttacaagcatgtctatctttcaatcccttttatctttcttagcattacctgcttcaaagtcaaagtcaaccaaatggttaagggttgaaaaactt |
113 |
Q |
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| T |
9307678 |
attcttacaagcatgtcaatctttcaatcccttttatcttttttagcattacctgcttcaaagtcatagtcaaccaaaaggttaagggttgcaaaactt |
9307580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 9335635 - 9335583
Alignment:
| Q |
49 |
tatctttcttagcattacctgcttcaaagtcaaagtcaaccaaatggttaagg |
101 |
Q |
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| T |
9335635 |
tatctttcttagcattacctgcttcaaagtcaaagtcaaccaaatggttaagg |
9335583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 9354719 - 9354671
Alignment:
| Q |
159 |
caacactagaagtggcttagacgcctcatctttagcaactatattaaga |
207 |
Q |
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| T |
9354719 |
caacactagaagtggcttggacgcctcatctttagcaactatattaaga |
9354671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 9333909 - 9333844
Alignment:
| Q |
211 |
acaaagatcttaaaattgaattaagagcaacactagaagtgacttggacgcctcatctttagcaac |
276 |
Q |
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| T |
9333909 |
acaaagatattcaaattgtattaagagcatcaccaaaagtggcttggacgcctcatctttaccaac |
9333844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 9307312 - 9307269
Alignment:
| Q |
166 |
agaagtggcttagacgcctcatctttagcaactatattaagagc |
209 |
Q |
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| T |
9307312 |
agaagtggcttggatgcctcatctttagcaacaatattaagagc |
9307269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 9347539 - 9347504
Alignment:
| Q |
13 |
ttattcttacaagcatgtctatctttcaatcccttt |
48 |
Q |
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| T |
9347539 |
ttattgttacaagcatgtctatctttcaatcccttt |
9347504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 9372499 - 9372465
Alignment:
| Q |
67 |
ctgcttcaaagtcaaagtcaaccaaatggttaagg |
101 |
Q |
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| T |
9372499 |
ctgcttcagagtcaaagtcaaccaaatggttaagg |
9372465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 9333889 - 9333836
Alignment:
| Q |
152 |
ttaagagcaacactagaagtggcttagacgcctcatctttagcaactatattaa |
205 |
Q |
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| T |
9333889 |
ttaagagcatcaccaaaagtggcttggacgcctcatctttaccaacaatattaa |
9333836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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