View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14827_low_15 (Length: 258)
Name: NF14827_low_15
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 41571548 - 41571321
Alignment:
| Q |
19 |
ataacattcattatatccttcccccaaaactcttcctcaaacatcaacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571548 |
ataacattcattatatccttcccccaaaactcttcctcaaacatcaacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatg |
41571449 |
T |
|
| Q |
119 |
atgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnnggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgcctt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571448 |
atgagtaatgaaaaacagcttctttaaaccttgtcacaaaaaaaggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgcctt |
41571349 |
T |
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| Q |
219 |
cttaatcaaatccaaaacagcacccctt |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
41571348 |
cttaatcaaatccaaaacagcacccctt |
41571321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 41590496 - 41590270
Alignment:
| Q |
19 |
ataacattcattatatccttcccccaaaactcttcctcaaacatcaacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatg |
118 |
Q |
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||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41590496 |
ataacattcattatatcattcccccaaaaaactacctcaaacatcaacctaaaaggatcctcacgttcaacattgttgtaatcaagcatatcaaacaatg |
41590397 |
T |
|
| Q |
119 |
atgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnnggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgcctt |
218 |
Q |
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||| |||| |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
41590396 |
ctgaataataaaaaacagcttccttaaaccttgtcacaaaaaaaggtgcatcataaccaccattaacaatgctatgaataaatatattcggatttgcctt |
41590297 |
T |
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| Q |
219 |
cttaatcaaatccaaaacagcacccct |
245 |
Q |
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||||||||||||||||||||||||||| |
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| T |
41590296 |
cttaatcaaatccaaaacagcacccct |
41590270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 41583965 - 41583741
Alignment:
| Q |
19 |
ataacattcattatatccttcccccaaaactcttcctcaaacatcaacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
41583965 |
ataacattcattatatccttcccccaaaacacttcctcaaacatcaacctaataggatcctcacgttcaacattgttgtgatcaagcgtatcaaacaatg |
41583866 |
T |
|
| Q |
119 |
atgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnnggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgcctt |
218 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||| ||| |||| |||| ||||||||||||||| |||| ||||||||||||||||| ||| |
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| T |
41583865 |
ctgaataatgaaaaacagcttccttaaaccttgtcacaaaaaaaggttcatcgtaaccaccattaacaatgctatgaataaatatattcggatttgtctt |
41583766 |
T |
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| Q |
219 |
cttaatcaaatccaaaacagcaccc |
243 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
41583765 |
tctaatcaaatccaaaacatcaccc |
41583741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 41557836 - 41557612
Alignment:
| Q |
19 |
ataacattcattatatccttcccccaaaactcttcctcaaacatcaacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatg |
118 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557836 |
ataacattcattatatctttcccccaaacgtctccctcaaacatcaacctaacaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatg |
41557737 |
T |
|
| Q |
119 |
atgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnnggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgcctt |
218 |
Q |
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||| ||||||||||||||||| |||||||||||||| ||| |||| |||| ||||||||||||||| |||| ||||||||||||||||| ||| |
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| T |
41557736 |
ctgaataatgaaaaacagcttccttaaaccttgtcacaaaaaaaggttcatcgtaaccaccattaacaatgctatgaataaatatattcggatttgtctt |
41557637 |
T |
|
| Q |
219 |
cttaatcaaatccaaaacagcaccc |
243 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
41557636 |
tctaatcaaatccaaaacagcaccc |
41557612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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