View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14827_low_19 (Length: 234)
Name: NF14827_low_19
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14827_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 49767050 - 49766855
Alignment:
| Q |
23 |
aatgcatatatattgatattagctatatatctctagaaaaagtggaaactat--gccctacaacaagagagttttcatagtatatgacagaatccaagat |
120 |
Q |
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| T |
49767050 |
aatgcatatatattgatattagctatatatctctagaaaaagtggaaactatatgccctacaacaagagagttttcatagtatatgacagaatccaagat |
49766951 |
T |
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| Q |
121 |
cgtaaacaaaactatacatgactttcaaatctaatctaacacatcgtccctgcttcttatcagtaggtttagtattacttgtacttatattatatc |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
49766950 |
cgtaaacaaaactatacatgactttcaaatataatctaacacatcgtccctgcttcttatcagtagatttagtatcacttgtacttatattatatc |
49766855 |
T |
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