View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14827_low_7 (Length: 397)

Name: NF14827_low_7
Description: NF14827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14827_low_7
NF14827_low_7
[»] chr5 (3 HSPs)
chr5 (1-383)||(27717137-27717519)
chr5 (1-37)||(24917748-24917784)
chr5 (1-37)||(24993658-24993694)
[»] chr3 (1 HSPs)
chr3 (91-189)||(21873586-21873683)
[»] chr4 (6 HSPs)
chr4 (91-215)||(9078278-9078400)
chr4 (1-45)||(21496416-21496460)
chr4 (1-44)||(21496592-21496635)
chr4 (1-46)||(54994239-54994284)
chr4 (4-43)||(7424254-7424293)
chr4 (159-217)||(54994223-54994281)
[»] chr8 (2 HSPs)
chr8 (165-266)||(40258806-40258906)
chr8 (1-47)||(41049904-41049950)
[»] chr1 (1 HSPs)
chr1 (95-148)||(16827334-16827386)
[»] chr7 (1 HSPs)
chr7 (204-283)||(42281916-42281994)
[»] chr6 (2 HSPs)
chr6 (4-43)||(7145418-7145457)
chr6 (5-47)||(14558439-14558481)


Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 27717137 - 27717519
Alignment:
Q  1 tatcaatatttcaaaatgatccctcgaattgcaaaatgttaatcaagcctgcccctctatttggatctgctgtcgaatgcatctttgtcatattcactta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27717137 tatcaatatttcaaaatgatccctcgaattgcaaaatgttaatcaagcctgcccctctatttggatctgctgtcgaatgcatctttgtcatattcactta 27717236  T
Q  101 gtttcgaattcatctctgatattacaaacttaatggtcattctagtccctaagcataccaatggagggacgaatttgattaaaattttgtacattcaggg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27717237 gtttcaaattcatctctgatattacaaacttaatggtcattctagtccctaagcataccaatggagggacgaatttgattaaaattttgtaaattcaggg 27717336  T
Q  201 ataattttggaatattgtaaatgtgaggaactagatttgctacagttctacaatttcaacgaccaatttgggtgtttactcatgcaacattcttttgaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27717337 ataattttggaatattgtaaatgtgaggaactagatttgctacagttctacaatttcaacgaccaatttgggtgtttactcatgcaacattcttttgaaa 27717436  T
Q  301 cacacttattgtcagatgaagacgaaaattccttacaatgatattgtaatcatatacgtaacgcatcccgtttatgtcgtact 383  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27717437 cacacttattgtcagatgaagacgaatattccttacaatgatattgtaatcatatacgtaacgcatcccgtttatgtcatact 27717519  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24917748 - 24917784
Alignment:
Q  1 tatcaatatttcaaaatgatccctcgaattgcaaaat 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  24917748 tatcaatattccaaaatgatccctggaattgcaaaat 24917784  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24993658 - 24993694
Alignment:
Q  1 tatcaatatttcaaaatgatccctcgaattgcaaaat 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  24993658 tatcaatattccaaaatgatccctggaattgcaaaat 24993694  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 21873586 - 21873683
Alignment:
Q  91 tattcacttagtttcgaattcatctctgatattacaaacttaatggtcattctagtccctaagcataccaatggagggacgaatttgattaaaattttg 189  Q
    ||||||||||||||| |||||||| |||||||||| || |||||| |||||||||||||||   |||||||| |||| |||| ||||||||||||||||    
T  21873586 tattcacttagtttccaattcatccctgatattaccaatttaatg-tcattctagtccctacaaataccaatagaggaacgagtttgattaaaattttg 21873683  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 9078400 - 9078278
Alignment:
Q  91 tattcacttagtttcgaattcatctctgatattacaaacttaatggtcattctagtccctaagcataccaatggagggacgaatttgattaaaattttgt 190  Q
    |||||| |||||||| ||| |||| |||||||||| ||||||   | |||| ||||||||    |||||||| ||||||||||||||||||||||||||     
T  9078400 tattcatttagtttcaaatccatccctgatattaccaacttac--gacattttagtccctgcaaataccaatagagggacgaatttgattaaaattttgc 9078303  T
Q  191 acattcagggataattttggaatat 215  Q
    |  |||  |||| ||||||||||||    
T  9078302 aatttcgaggatcattttggaatat 9078278  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21496416 - 21496460
Alignment:
Q  1 tatcaatatttcaaaatgatccctcgaattgcaaaatgttaatca 45  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  21496416 tatcaatatttcaaaatgatccctgaaattgcaaaatgttaatca 21496460  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21496635 - 21496592
Alignment:
Q  1 tatcaatatttcaaaatgatccctcgaattgcaaaatgttaatc 44  Q
    |||||||||||||||||||||| | |||||||||||||||||||    
T  21496635 tatcaatatttcaaaatgatccttagaattgcaaaatgttaatc 21496592  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 54994284 - 54994239
Alignment:
Q  1 tatcaatatttcaaaatgatccctcgaattgcaaaatgttaatcaa 46  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||||    
T  54994284 tatcaatatttcaaaattatccctcaaattacaaaatgttaatcaa 54994239  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 7424254 - 7424293
Alignment:
Q  4 caatatttcaaaatgatccctcgaattgcaaaatgttaat 43  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  7424254 caatatttcaaaatgatccctgaaattgcaaaatgttaat 7424293  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 54994223 - 54994281
Alignment:
Q  159 caatggagggacgaatttgattaaaattttgtacattcagggataattttggaatattg 217  Q
    ||||||||||| | |||||||||| ||||||||  || ||||||||||||| |||||||    
T  54994223 caatggagggatgcatttgattaacattttgtaatttgagggataattttgaaatattg 54994281  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 40258806 - 40258906
Alignment:
Q  165 agggacgaatttgattaaaattttgtacattcagggataattttggaatattgtaaatgtgaggaactagatttgctacagttctacaatttcaacgacc 264  Q
    |||||| ||||||||||||||||||||  ||||| ||| ||||| |||||| |  |||||||| ||||||| | |||| ||| ||| ||||||||| |||    
T  40258806 agggacaaatttgattaaaattttgtaatttcagagatcatttttgaatatcgataatgtgagtaactaga-tcgctatagtcctataatttcaactacc 40258904  T
Q  265 aa 266  Q
    ||    
T  40258905 aa 40258906  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41049904 - 41049950
Alignment:
Q  1 tatcaatatttcaaaatgatccctcgaattgcaaaatgttaatcaag 47  Q
    |||| |||||||||||||||| ||| ||||||||||| |||||||||    
T  41049904 tatcgatatttcaaaatgatctctcaaattgcaaaattttaatcaag 41049950  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 16827334 - 16827386
Alignment:
Q  95 cacttagtttcgaattcatctctgatattacaaacttaatggtcattctagtcc 148  Q
    ||||||||||| |||||||||| || |||||||||||||| |||||||||||||    
T  16827334 cacttagtttcaaattcatctcggagattacaaacttaat-gtcattctagtcc 16827386  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 42281994 - 42281916
Alignment:
Q  204 attttggaatattgtaaatgtgaggaactagatttgctacagttctacaatttcaacgaccaatttgggtgtttactcat 283  Q
    |||||| |||||||  ||||||||  ||||||||  | ||| || ||||||||||| |||||||||||||||||||||||    
T  42281994 attttgaaatattgataatgtgagagactagattgac-acaattatacaatttcaaggaccaatttgggtgtttactcat 42281916  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 7145418 - 7145457
Alignment:
Q  4 caatatttcaaaatgatccctcgaattgcaaaatgttaat 43  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  7145418 caatatttcaaaatgatccctgaaattgcaaaatgttaat 7145457  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 14558481 - 14558439
Alignment:
Q  5 aatatttcaaaatgatccctcgaattgcaaaatgttaatcaag 47  Q
    ||||||||||||||||||||  | |||||||||||||||||||    
T  14558481 aatatttcaaaatgatccctgaatttgcaaaatgttaatcaag 14558439  T

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