View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14828_high_3 (Length: 317)
Name: NF14828_high_3
Description: NF14828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14828_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 145 - 301
Target Start/End: Original strand, 2654041 - 2654197
Alignment:
| Q |
145 |
tattcaagaatcccaagttttaaggaaaatttattagactttgaaaatttgtaacaggtcaacacattttttagcgacatcttttacttgtttcggattc |
244 |
Q |
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| T |
2654041 |
tattcaagaatcccaagttttaaggaaaatttattagactttgaaaatttgtaacaggtcaacacattttttagcgacatcttttacttgtttcggattc |
2654140 |
T |
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| Q |
245 |
cgttgattaaaatttgtattaatatttttgaaaaaatctatttccttaattatgttt |
301 |
Q |
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| T |
2654141 |
cgttgattaaaatttgtattaatatttttgaaaaaatctatttccttaattatgttt |
2654197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 2653906 - 2653987
Alignment:
| Q |
14 |
atgaaactagactttacaagctttgttgtaacacttttgtgttctatgattttttcctccatgatggttatcacaactatag |
95 |
Q |
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| T |
2653906 |
atgaaactagactttacaagctttgttgtaacacttttgtgttctatgattttttcctccatgatggttatcacaactatag |
2653987 |
T |
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