View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14828_high_4 (Length: 287)
Name: NF14828_high_4
Description: NF14828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14828_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 33969415 - 33969671
Alignment:
| Q |
13 |
gagatgaagtgaagagaatgatggaagagattgatactgatggtgacggattcatttcttatgatgagttcactgaattcgcaaaagccaaccgtggtct |
112 |
Q |
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| T |
33969415 |
gagatgaagtgaagagaatgatggaagagattgatactgatggcgacggattcatttcttatgatgagttcactgaattcgcaaaagccaaccgtggtct |
33969514 |
T |
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| Q |
113 |
agtcaaagatgtcgccaagannnnnnnnnnnnnnnncgcacctttaacctacctttgttggttgatttcattagagttttcaaaaatatattatatgtgt |
212 |
Q |
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| T |
33969515 |
agtcaaagatgtcgccaagattttttaactttttttcgcacctttaacctacctttgttggttgatttcattagagttttcaaaaatatattatatgtgt |
33969614 |
T |
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| Q |
213 |
gcatgatttctatattacattatgacaatgaaaggttcattaatttcatgaagttat |
269 |
Q |
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| T |
33969615 |
gcatgatttctatattacattatgacaatgaaaggttcattaatttcatgaagttat |
33969671 |
T |
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