View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14828_high_5 (Length: 273)

Name: NF14828_high_5
Description: NF14828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14828_high_5
NF14828_high_5
[»] chr5 (9 HSPs)
chr5 (13-254)||(41169242-41169484)
chr5 (175-247)||(3907706-3907778)
chr5 (185-244)||(3771221-3771280)
chr5 (175-243)||(36059263-36059331)
chr5 (175-222)||(825074-825122)
chr5 (175-247)||(25545270-25545342)
chr5 (175-220)||(4190074-4190119)
chr5 (175-220)||(27195267-27195312)
chr5 (9-38)||(38843765-38843794)
[»] chr3 (15 HSPs)
chr3 (171-254)||(35357362-35357445)
chr3 (175-247)||(11532487-11532559)
chr3 (185-250)||(19560654-19560719)
chr3 (175-247)||(13540191-13540263)
chr3 (175-247)||(14345203-14345275)
chr3 (175-250)||(29955053-29955128)
chr3 (175-250)||(30004207-30004282)
chr3 (180-243)||(36480763-36480826)
chr3 (175-224)||(3901568-3901617)
chr3 (175-247)||(31205384-31205456)
chr3 (197-248)||(40554075-40554126)
chr3 (163-249)||(45332594-45332680)
chr3 (175-245)||(49750617-49750687)
chr3 (175-224)||(3901514-3901563)
chr3 (186-247)||(32881023-32881084)
[»] chr4 (13 HSPs)
chr4 (175-247)||(16457935-16458007)
chr4 (175-247)||(21433925-21433997)
chr4 (175-247)||(33414018-33414090)
chr4 (175-224)||(19382312-19382361)
chr4 (179-247)||(2324777-2324845)
chr4 (175-243)||(45654067-45654135)
chr4 (178-243)||(2247635-2247700)
chr4 (175-248)||(41840644-41840716)
chr4 (175-247)||(31758702-31758774)
chr4 (175-251)||(52374932-52375008)
chr4 (182-247)||(53127984-53128049)
chr4 (185-241)||(9023935-9023991)
chr4 (183-247)||(17181271-17181335)
[»] chr2 (16 HSPs)
chr2 (171-249)||(1469789-1469867)
chr2 (185-250)||(44247563-44247628)
chr2 (175-243)||(18719746-18719814)
chr2 (175-247)||(42094255-42094326)
chr2 (175-250)||(4237299-4237374)
chr2 (185-247)||(3466439-3466501)
chr2 (177-247)||(45300419-45300489)
chr2 (175-220)||(1469754-1469799)
chr2 (177-245)||(1930687-1930755)
chr2 (175-247)||(16209390-16209462)
chr2 (175-247)||(25666850-25666922)
chr2 (175-247)||(42029357-42029429)
chr2 (176-247)||(37810198-37810269)
chr2 (175-250)||(42251178-42251253)
chr2 (177-247)||(2683428-2683498)
chr2 (175-247)||(33069219-33069291)
[»] chr1 (13 HSPs)
chr1 (175-247)||(2542754-2542826)
chr1 (180-243)||(40374093-40374155)
chr1 (174-243)||(39131619-39131688)
chr1 (175-247)||(31970172-31970244)
chr1 (175-247)||(38663666-38663738)
chr1 (175-250)||(23317924-23317999)
chr1 (179-238)||(34437617-34437676)
chr1 (175-250)||(45563081-45563156)
chr1 (9-50)||(36801891-36801932)
chr1 (175-248)||(40668944-40669017)
chr1 (175-220)||(40669008-40669053)
chr1 (175-220)||(49822607-49822652)
chr1 (191-247)||(33422662-33422718)
[»] chr8 (15 HSPs)
chr8 (172-247)||(35586416-35586490)
chr8 (172-247)||(26018512-26018587)
chr8 (175-250)||(40175943-40176018)
chr8 (177-242)||(20271023-20271090)
chr8 (177-242)||(21057651-21057718)
chr8 (175-247)||(42072675-42072747)
chr8 (175-250)||(2288614-2288689)
chr8 (175-246)||(34504430-34504501)
chr8 (175-245)||(38835015-38835085)
chr8 (175-247)||(40696203-40696275)
chr8 (197-247)||(30262810-30262860)
chr8 (185-250)||(30649973-30650036)
chr8 (177-247)||(40694665-40694735)
chr8 (175-244)||(13260407-13260476)
chr8 (179-247)||(4994174-4994242)
[»] chr7 (12 HSPs)
chr7 (175-247)||(12275790-12275862)
chr7 (187-245)||(40134440-40134498)
chr7 (175-245)||(49106960-49107029)
chr7 (175-220)||(2276292-2276337)
chr7 (175-247)||(2276329-2276401)
chr7 (179-246)||(26862966-26863033)
chr7 (175-218)||(29356932-29356975)
chr7 (185-247)||(47497752-47497814)
chr7 (171-220)||(7526129-7526178)
chr7 (185-250)||(24516581-24516646)
chr7 (175-243)||(11201308-11201376)
chr7 (175-247)||(18089754-18089826)
[»] chr6 (8 HSPs)
chr6 (187-247)||(11650916-11650976)
chr6 (189-248)||(26328212-26328271)
chr6 (175-243)||(12731610-12731678)
chr6 (175-234)||(1473630-1473689)
chr6 (185-247)||(6643367-6643429)
chr6 (189-246)||(3150238-3150295)
chr6 (177-246)||(4483383-4483452)
chr6 (185-250)||(24783891-24783956)
[»] scaffold0003 (1 HSPs)
scaffold0003 (175-243)||(136377-136445)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 41169242 - 41169484
Alignment:
Q  13 cacaaactcaaatcaaatttatttggacgcgcacaca--atggtnnnnnnnnnnnnnngaaatttaatcacatcctttaaatatattcttctttaannnn 110  Q
    |||||||||||||||||||||||||||||||||||||  |||||              |||||||||||||||||||||| |||||||||||||||        
T  41169242 cacaaactcaaatcaaatttatttggacgcgcacacacaatggtaaaaaattaaaaaagaaatttaatcacatcctttaagtatattcttctttaatttt 41169341  T
Q  111 nnnncatttgtgagtgtatgctcaaataaaattaatttaagattgtgtcataaatgctagtaacacacactctatttgattggttgaaattcacatggat 210  Q
        ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41169342 ttt-catttgtgagtgtatgctcaaataaaattaatttaagattgtgtcatgaatgctagtaacacacactctatttgattggttgaaattcacatggat 41169440  T
Q  211 tccaccaaatcatgcgagtcccatataaatttggtggatcacat 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41169441 tccaccaaatcatgcgagtcccatataaatttggtggatcacat 41169484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 3907778 - 3907706
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||| ||| ||||||||||| |||||||||||| | ||||||||||||| | ||||||||||||||||||||    
T  3907778 acacattctttttgattggttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgg 3907706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 3771280 - 3771221
Alignment:
Q  185 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttgg 244  Q
    ||||||||||| |||||||||| | ||||||||||||||||| | |||||||||||||||    
T  3771280 tttgattggttaaaattcacattggttccaccaaatcatgcgggacccatataaatttgg 3771221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 36059331 - 36059263
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttg 243  Q
    ||||||| ||||||||||||| ||||| |||||||| ||| ||||||||| | ||| ||||||||||||    
T  36059331 acacactttatttgattggttaaaatttacatggatcccatcaaatcatgtgggtctcatataaatttg 36059263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 825074 - 825122
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggatt-ccaccaaatca 222  Q
    ||||||||||||||||||||| |||||||||| |||| |||||||||||    
T  825074 acacactctatttgattggttaaaattcacattgattgccaccaaatca 825122  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 25545342 - 25545270
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||||||||||| |||||||| ||  | |||||||||||||   ||||||||||||||| ||||    
T  25545342 acacactctctttgattggttaaaattcacgtgagtcccaccaaatcatgtcggtcccatataaatttagtgg 25545270  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 4190074 - 4190119
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaat 220  Q
    ||||||||| ||||||||||| |||||||||||||| ||| |||||    
T  4190074 acacactctctttgattggttaaaattcacatggatcccaacaaat 4190119  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 27195267 - 27195312
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaat 220  Q
    ||||||||| ||| |||| || ||||||||||||||||||||||||    
T  27195267 acacactctttttaattgattaaaattcacatggattccaccaaat 27195312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 38843765 - 38843794
Alignment:
Q  9 tgggcacaaactcaaatcaaatttatttgg 38  Q
    ||||||||||||||||||||||||||||||    
T  38843765 tgggcacaaactcaaatcaaatttatttgg 38843794  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 35357445 - 35357362
Alignment:
Q  171 taacacacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatcacat 254  Q
    ||||||||||||| ||||||||||| |||||||||||| | | |||||||||||  ||||||||||||||||||||| ||||||    
T  35357445 taacacacactctctttgattggttaaaattcacatgggtcctaccaaatcatgtaagtcccatataaatttggtggttcacat 35357362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 11532559 - 11532487
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||||||| |  |||||||||||||| ||||    
T  11532559 acacactctctttgattggttaaaattcacatgggttccaccaaatcatgtggatcccatataaatttagtgg 11532487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 19560654 - 19560719
Alignment:
Q  185 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||||||||||||||| |||| | ||||||||||||| | |||||||| |||||| |||||||    
T  19560654 tttgattggttgaaattcatatgggtcccaccaaatcatgtgggtcccatacaaatttagtggatc 19560719  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 13540191 - 13540263
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||||||||||| ||| | |||||| | ||||||||||||| ||| || |||||||||||||||    
T  13540191 acacactctctttgattggtttaaactaacatggctcccaccaaatcatgtgagacctatataaatttggtgg 13540263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 14345275 - 14345203
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    |||||||||  || ||| ||| ||||||||||| || ||||||||||||| | ||||||||||||||||||||    
T  14345275 acacactcttctttattcgttaaaattcacatgaatcccaccaaatcatgtgggtcccatataaatttggtgg 14345203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 29955053 - 29955128
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||| | ||||||||||| |||||||||||| | ||| ||||||||| | |||||| ||||||||| ||||||    
T  29955053 acacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatggatc 29955128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 30004207 - 30004282
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||| | ||||||||||| |||||||||||| | ||| ||||||||| | |||||| ||||||||| ||||||    
T  30004207 acacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatggatc 30004282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 36480826 - 36480763
Alignment:
Q  180 ctctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttg 243  Q
    |||| ||||||||| | |||||||||||| | ||||||||||||| | ||||||||||||||||    
T  36480826 ctctctttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttg 36480763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 3901617 - 3901568
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatg 224  Q
    ||||||||| ||||||||||| |||||||||||| | |||||||||||||    
T  3901617 acacactctctttgattggttaaaattcacatgggtcccaccaaatcatg 3901568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 31205384 - 31205456
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||||||||||| ||||| |||||| |   ||||||||||| | |||||||||||| |||||||    
T  31205384 acacactctctttgattggttaaaatttacatgggtcttaccaaatcatgtgggtcccatataaaattggtgg 31205456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 40554075 - 40554126
Alignment:
Q  197 aaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgga 248  Q
    |||||||||||| | ||||||||||||| ||| |||||||||||||| ||||    
T  40554075 aaattcacatgggtcccaccaaatcatgtgagacccatataaatttgatgga 40554126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 45332680 - 45332594
Alignment:
Q  163 aatgctagtaacacacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggat 249  Q
    |||||||| |||| ||| |||  ||||||| || ||||| |||||| |   ||||||||||| | ||||||||||||||||||||||    
T  45332680 aatgctagcaacatacattcttcttgattgttttaaatttacatgggtctgaccaaatcatgtgggtcccatataaatttggtggat 45332594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 49750617 - 49750687
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggt 245  Q
    ||||| ||| |||||||| || ||||||||||||||||||| ||||| || ||| | | ||||||||||||    
T  49750617 acacattctctttgattgattaaaattcacatggattccactaaatcgtgtgagcctcgtataaatttggt 49750687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 3901514 - 3901563
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatg 224  Q
    ||||| ||| ||||||||||| |||||||||||| | |||||||||||||    
T  3901514 acacattctctttgattggttaaaattcacatgggtcccaccaaatcatg 3901563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 32881023 - 32881084
Alignment:
Q  186 ttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    |||||||||| | |||||||||| | |||| |||||||| |  |||||||||||||||||||    
T  32881023 ttgattggttaatattcacatgggtcccacaaaatcatgtggatcccatataaatttggtgg 32881084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 16457935 - 16458007
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||||||||||| |||||||||||||| ||| ||||||||| | ||||||||||||||||||||    
T  16457935 acacactctctttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttggtgg 16458007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 21433997 - 21433925
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||||||| | ||| ||||||||||||||||    
T  21433997 acacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtctcatataaatttggtgg 21433925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 33414018 - 33414090
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||| | | |||| |||||||||||||||    
T  33414018 acacactctctttgattggttaaaattcacatggatcccaccaaatcacgtgggtcctatataaatttggtgg 33414090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 19382312 - 19382361
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatg 224  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  19382312 acacactctatttgattggttaaaattcacatggatcccaccaaatcatg 19382361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 2324777 - 2324845
Alignment:
Q  179 actctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||| ||||||||||| |||||||||||  || |||||||||||| | ||||||||||||||||||||    
T  2324777 actctctttgattggttaaaattcacatgagtttcaccaaatcatgtgggtcccatataaatttggtgg 2324845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 45654135 - 45654067
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttg 243  Q
    ||||||| | ||||||||||| |||||||||||||| ||| ||||||||| | ||||||||||||||||    
T  45654135 acacactttttttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttg 45654067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 2247700 - 2247635
Alignment:
Q  178 cactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttg 243  Q
    |||||| ||||||||||| ||||| |||||||| ||||||||||||| | ||| ||||||||||||    
T  2247700 cactctctttgattggttaaaattaacatggatcccaccaaatcatgtgggtcgcatataaatttg 2247635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 41840716 - 41840644
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgga 248  Q
    ||||||||||||||||||||| |||||||||||  |||||| |||| | |||| |  |||||||||||||||||    
T  41840716 acacactctatttgattggttaaaattcacatgagttccactaaattaagcga-tgacatataaatttggtgga 41840644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 31758702 - 31758774
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||| ||||||||||||||| ||||||||||    |||||||||||||| | ||| ||| ||||||||||||    
T  31758702 acacattctatttgattggttaaaattcacataagctccaccaaatcatgtgggtctcatgtaaatttggtgg 31758774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 52374932 - 52375008
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatca 251  Q
    ||||||||| |||||| | || ||||||||||||||  |||||||| ||| | ||||| |||||||||| |||||||    
T  52374932 acacactctctttgatagattaaaattcacatggatctcaccaaattatgtgggtcccgtataaatttgatggatca 52375008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 53127984 - 53128049
Alignment:
Q  182 ctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    |||||||||||||| ||| |||||||| | |||||| |||| | | |||| |||||||||||||||    
T  53127984 ctatttgattggttaaaactcacatgggtcccaccatatcaagtgggtcctatataaatttggtgg 53128049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 9023935 - 9023991
Alignment:
Q  185 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatt 241  Q
    ||||||||| | |||||||||||  | ||| ||||||||| ||||||||||||||||    
T  9023935 tttgattgggtaaaattcacatgagtcccaacaaatcatgtgagtcccatataaatt 9023991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 17181335 - 17181271
Alignment:
Q  183 tatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||| |||||||||| | | ||||||||||| | | ||| ||||||||||||||||    
T  17181335 tatttgattagttaaaattcacataggtcccaccaaatcacgtgggtctcatataaatttggtgg 17181271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 1469867 - 1469789
Alignment:
Q  171 taacacacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggat 249  Q
    ||||||||||| | ||| ||||||| |||||||||||||| |||| |||||||| | ||||||||||||||||||||||    
T  1469867 taacacacacttttttttattggttaaaattcacatggatcccacaaaatcatgtgggtcccatataaatttggtggat 1469789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 44247563 - 44247628
Alignment:
Q  185 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    |||||||||||||||||||||||| ||||||||||| ||| | |||||||| ||||||| ||||||    
T  44247563 tttgattggttgaaattcacatgggttccaccaaattatgtgggtcccatacaaatttgatggatc 44247628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 18719746 - 18719814
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttg 243  Q
    ||||||||| ||||||||||| ||||||||| |  ||||||||||||||| | ||||||||||||||||    
T  18719746 acacactctttttgattggttaaaattcacacgagttccaccaaatcatgtgggtcccatataaatttg 18719814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 42094326 - 42094255
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    |||||| || ||||||||||| |||||||||||| | ||||||||||||| | ||||||||||||||||||||    
T  42094326 acacacactctttgattggttaaaattcacatgg-tcccaccaaatcatgtgggtcccatataaatttggtgg 42094255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 4237374 - 4237299
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||| | ||||||| ||| |||||||||||| | ||||||||||||| | |||||||| ||||||||||||||    
T  4237374 acacactttttttgattagttaaaattcacatgggtaccaccaaatcatgtgggtcccatacaaatttggtggatc 4237299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 3466501 - 3466439
Alignment:
Q  185 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||||| |||||||||||| |||||| ||||| || | ||||||||| ||||||||||    
T  3466501 tttgattggttaaaattcacatgggttccactaaatcgtgtgggtcccatatgaatttggtgg 3466439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 45300489 - 45300419
Alignment:
Q  177 acactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||| ||  | |||||||||| |||| ||||    
T  45300489 acactctttttgattggttaaaattcacatggattccatcaaattatatgggtcccatatagatttagtgg 45300419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 1469754 - 1469799
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaat 220  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  1469754 acacactctatttaattggttaaaattcacatggaatccaccaaat 1469799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 1930687 - 1930755
Alignment:
Q  177 acactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggt 245  Q
    ||||||| ||||||||||| ||||||||||   ||||| ||||| ||| | ||||||||||||||||||    
T  1930687 acactctttttgattggttaaaattcacatatgttccatcaaattatgtgggtcccatataaatttggt 1930755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 16209390 - 16209462
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||| ||||||| |||||||||||  |||||||||||  ||   ||||||||||||||||||||    
T  16209390 acacactctctttaattggttaaaattcacatgagttccaccaaattttgtcggtcccatataaatttggtgg 16209462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 25666922 - 25666850
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||||||  ||| |||| ||||||||| |||||||||||||   || |||||||||||||||||    
T  25666922 acacactctctttgatgtgttaaaatccacatggatcccaccaaatcatgtaggttccatataaatttggtgg 25666850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 42029357 - 42029429
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||| ||||||||| ||| ||||||| |||| | | |||||||||||||   ||||||||||||||||||    
T  42029357 acacactgtatttgatttgttaaaattcatatgggtcctaccaaatcatgcggaccccatataaatttggtgg 42029429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 37810269 - 37810198
Alignment:
Q  176 cacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    |||||||  ||||||||||| |||||||||||| | ||||||||| |   | ||||||||||||||||||||    
T  37810269 cacactcactttgattggttaaaattcacatgggtcccaccaaattagatgggtcccatataaatttggtgg 37810198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 42251178 - 42251253
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||||| |||||| |||| |||||| ||||| | ||||||||| ||| | | || ||||||||||||||||||    
T  42251178 acacactctctttgatcggttaaaattcgcatgggtcccaccaaattatgtgggacctatataaatttggtggatc 42251253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 2683498 - 2683428
Alignment:
Q  177 acactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||| ||||||||||| ||||| | |||| ||||||||||||||| | ||||  |||||||| |||||    
T  2683498 acactctttttgattggttaaaatttatatgggttccaccaaatcatgtgggtccagtataaattcggtgg 2683428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 33069291 - 33069219
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||||||||||| ||| |||| ||| | |||| |||| ||| | |||||||||||| |||||||    
T  33069291 acacactctttttgattggttaaaaatcacttgggtcccactaaattatgtgggtcccatataaacttggtgg 33069219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 2542826 - 2542754
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||| ||| ||||||||||| |||||||||||| ||||||||||||||| | || |||||||||||||||||    
T  2542826 acacattctctttgattggttaaaattcacatggcttccaccaaatcatgtgggttccatataaatttggtgg 2542754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 40374155 - 40374093
Alignment:
Q  180 ctctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttg 243  Q
    |||||||||||||||| ||||||||||||   ||||||||||||| | ||||||||||||||||    
T  40374155 ctctatttgattggttaaaattcacatgg-ccccaccaaatcatgtgggtcccatataaatttg 40374093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 39131688 - 39131619
Alignment:
Q  174 cacacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttg 243  Q
    |||||| ||| |||||||||||||||||||||| | | ||||||||||| | | ||||| ||||||||||    
T  39131688 cacacagtctttttgattggttgaaattcacatagttgccaccaaatcaagtgggtcccgtataaatttg 39131619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 31970244 - 31970172
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||| |||| || || |||| |||| | ||||||||||||| | ||||||||||||||||||||    
T  31970244 acacactctttttaattgattaaatttcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgg 31970172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 38663666 - 38663738
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| |||||||||||  ||||||||| | | ||||||||||||  | |||| |||||||||||||||    
T  38663666 acacactctctttgattggttacaattcacataggtcccaccaaatcatatgggtcctatataaatttggtgg 38663738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 23317924 - 23317999
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||||  ||| ||| ||| |||||||||| | | ||||||||||||| | ||||||||||||||| |||||||    
T  23317924 acacactccctttaatttgttaaaattcacataggtcccaccaaatcatgtgggtcccatataaatttagtggatc 23317999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 34437617 - 34437676
Alignment:
Q  179 actctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataa 238  Q
    ||||| ||||||||||| |||||||||||| | ||||||||||||| | | |||||||||    
T  34437617 actctctttgattggttaaaattcacatgggtcccaccaaatcatgtgggacccatataa 34437676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 45563081 - 45563156
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||| | ||||||||||| |||| ||||||| | |||||||||||||    || |||||||||||||||||||    
T  45563081 acacactatctttgattggttaaaatgcacatggctcccaccaaatcatgttgatctcatataaatttggtggatc 45563156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 36801891 - 36801932
Alignment:
Q  9 tgggcacaaactcaaatcaaatttatttggacgcgcacacaa 50  Q
    ||||||||||| |||||||||||||||||| ||| |||||||    
T  36801891 tgggcacaaacccaaatcaaatttatttgggcgcacacacaa 36801932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 40668944 - 40669017
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgga 248  Q
    ||||||||| ||||||||||| ||| |||||||| |  ||| |||| ||| | | |||||||||||||||||||    
T  40668944 acacactctctttgattggttaaaactcacatgggtctcacaaaattatgtgggacccatataaatttggtgga 40669017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 40669053 - 40669008
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaat 220  Q
    ||||||||| ||||||||||| ||||||||| || |||||||||||    
T  40669053 acacactctctttgattggttaaaattcacacgggttccaccaaat 40669008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 49822652 - 49822607
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaat 220  Q
    ||||||||| ||||||||||| |||||||||||||| ||| |||||    
T  49822652 acacactctctttgattggttaaaattcacatggatcccatcaaat 49822607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 33422662 - 33422718
Alignment:
Q  191 tggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||||||| |||| ||||||||||| ||| | || ||||| |||||||||||    
T  33422662 tggttgaaattcatatggtttccaccaaattatgtgggttccatacaaatttggtgg 33422718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 35586416 - 35586490
Alignment:
Q  172 aacacacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    |||||||||||| ||||||||||| ||||||||| || | ||||||||||||| ||||| ||||||||||||||||    
T  35586416 aacacacactctctttgattggttaaaattcacacgg-tcccaccaaatcatgtgagtctcatataaatttggtgg 35586490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 26018587 - 26018512
Alignment:
Q  172 aacacacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||||||  |||||||||| |||||||||||| | ||| ||||| ||| | ||||||||||||||||||||    
T  26018587 aacacacactctccttgattggttaaaattcacatgggtcccatcaaattatgtgggtcccatataaatttggtgg 26018512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 40176018 - 40175943
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||||  ||| ||||||| |||||||||||| | ||||||||| ||| | |||||||||||||||||||||||    
T  40176018 acacactccttttaattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtggatc 40175943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 20271023 - 20271090
Alignment:
Q  177 acactctatttgattggttgaaa--ttcacatggattccaccaaatcatgcgagtcccatataaattt 242  Q
    ||||||| ||||||||||| |||  ||||||||||| ||||||||||||| | |||||||||||||||    
T  20271023 acactctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattt 20271090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 21057651 - 21057718
Alignment:
Q  177 acactctatttgattggttgaaa--ttcacatggattccaccaaatcatgcgagtcccatataaattt 242  Q
    ||||||| ||||||||||| |||  ||||||||||| ||||||||||||| | |||||||||||||||    
T  21057651 acactctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattt 21057718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 42072675 - 42072747
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||||||||||| | |||||||||| | ||||||||||||  | ||| ||||||||||||||||    
T  42072675 acacactctctttgattggttaacattcacatgggtcccaccaaatcatatgggtctcatataaatttggtgg 42072747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 2288614 - 2288689
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||||| ||||||||||| ||||| |||||| || ||||||||||   | |||||||||||||||| ||||||    
T  2288614 acacactctctttgattggttaaaatttacatgggtttcaccaaatcacatgggtcccatataaatttgatggatc 2288689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 34504501 - 34504430
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtg 246  Q
    ||||||| | ||||||||||| |||||| ||||| |  |||||||||||| | |||||||||||||||||||    
T  34504501 acacactttttttgattggttaaaattcgcatgggtcacaccaaatcatgtgggtcccatataaatttggtg 34504430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 38835015 - 38835085
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggt 245  Q
    ||||| ||| ||||||||  | |||||||||||| |  |||||||||||||| ||||||||||||||||||    
T  38835015 acacattctctttgattgactaaaattcacatgggtctcaccaaatcatgcgggtcccatataaatttggt 38835085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 40696203 - 40696275
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| ||||||| ||| |||||||||||| | ||||||||||||| | || | ||||| |||||||||    
T  40696203 acacactctttttgattagttaaaattcacatgggtcccaccaaatcatgtgggttctatatagatttggtgg 40696275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 30262860 - 30262810
Alignment:
Q  197 aaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    |||||||||| |||||||||| |||||  |||| |||||||||||||||||    
T  30262860 aaattcacatagattccaccacatcatttgagtaccatataaatttggtgg 30262810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 30649973 - 30650036
Alignment:
Q  185 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||| ||| |||||||||||||| |||||| || ||  ||||||||| |||||||||||||||    
T  30649973 tttgatttgttaaaattcacatggatcccaccatattat--gagtcccatgtaaatttggtggatc 30650036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 40694735 - 40694665
Alignment:
Q  177 acactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||| ||| ||| ||| |||||||||||| | ||||||||||||| | |||| ||||| |||||||||    
T  40694735 acactcttttttattagttaaaattcacatgggtcccaccaaatcatgtgggtcctatatagatttggtgg 40694665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 13260407 - 13260476
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttgg 244  Q
    ||||||| | ||| ||||||| |||| ||||||| | ||||||| ||||| | |||||||||||||||||    
T  13260407 acacactatcttttattggttaaaatgcacatgggtcccaccaactcatgtgggtcccatataaatttgg 13260476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 4994174 - 4994242
Alignment:
Q  179 actctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||| ||||||||||| ||||||  |||  | ||||||||||||| | ||||||||||||||| ||||    
T  4994174 actctttttgattggttaaaattcttatgagtcccaccaaatcatgtgggtcccatataaattttgtgg 4994242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 12275862 - 12275790
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| || |||||||| ||||||| |||| | ||||||||||||| | ||||||||||||||||||||    
T  12275862 acacactctcttcgattggttaaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgg 12275790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 40134498 - 40134440
Alignment:
Q  187 tgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggt 245  Q
    ||||||||| |||||||||||| | ||||||||| ||| | ||||||||||||||||||    
T  40134498 tgattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggt 40134440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 49107029 - 49106960
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggt 245  Q
    ||||||||| ||||||||||| |||||||||| | | ||||||||||||||| |  |||||||||||||||    
T  49107029 acacactctctttgattggttaaaattcacataggtcccaccaaatcatgcg-ggaccatataaatttggt 49106960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 2276292 - 2276337
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaat 220  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||    
T  2276292 acacactctctttgattggttaaaattcacatggatcccaccaaat 2276337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 2276401 - 2276329
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||| | ||| ||||||| ||||||||||| || ||||||||| ||| | ||||| ||||||||||||||    
T  2276401 acacactatctttaattggttaaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtgg 2276329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 26863033 - 26862966
Alignment:
Q  179 actctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtg 246  Q
    ||||| ||| ||||||| |||||||||||| | ||||||||||||| | |||| |||||||| |||||    
T  26863033 actctctttaattggttaaaattcacatgggtcccaccaaatcatgtgggtcctatataaatatggtg 26862966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 29356932 - 29356975
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaa 218  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||    
T  29356932 acacactctctttgattggttaaaattcacatgggttccaccaa 29356975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 47497814 - 47497752
Alignment:
Q  185 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||||| |||||||||||  | ||||||||| ||| | |||||||| |||||||||||    
T  47497814 tttgattggttaaaattcacatgagtcccaccaaattatgtgggtcccatacaaatttggtgg 47497752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 7526129 - 7526178
Alignment:
Q  171 taacacacactctatttgattggttgaaattcacatggattccaccaaat 220  Q
    ||||||||||||  ||||||| ||| |||||||||||||| |||||||||    
T  7526129 taacacacactcactttgatttgttaaaattcacatggatcccaccaaat 7526178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 24516581 - 24516646
Alignment:
Q  185 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||||||| |||||||||||| | ||||||||||||| |  | |||| ||||||| |||||||    
T  24516581 tttgattggttaaaattcacatgggtcccaccaaatcatgtggattccatctaaatttagtggatc 24516646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 11201308 - 11201376
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttg 243  Q
    ||||||||| ||| ||| ||| |||||||||||| | ||||||||||| | | ||| ||||||||||||    
T  11201308 acacactctctttcattagttaaaattcacatgggtcccaccaaatcacgtgggtctcatataaatttg 11201376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 18089826 - 18089754
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| |||| |||||| |||||||||||| | | ||||||| ||| |   ||||||||||||||||||    
T  18089826 acacactctctttggttggttaaaattcacatgggtccaaccaaattatgtggaacccatataaatttggtgg 18089754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 11650916 - 11650976
Alignment:
Q  187 tgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||| |||||||||||||| ||||||||| ||| | ||||||||||||||||||||    
T  11650916 tgattggttaaaattcacatggatcccaccaaattatgtgggtcccatataaatttggtgg 11650976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 26328271 - 26328212
Alignment:
Q  189 attggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgga 248  Q
    |||| ||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||    
T  26328271 attgattgaaattcacatgggttccaccgaatcatgtgggtcccatataaatttggtgga 26328212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 12731678 - 12731610
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttg 243  Q
    ||||||||| ||||||||||| ||||| |||| | ||||||||||||||| | |||||| |||||||||    
T  12731678 acacactctttttgattggttaaaatttacatagcttccaccaaatcatgtgggtcccaaataaatttg 12731610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 1473630 - 1473689
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccat 234  Q
    ||||||| | ||||||||||| |||||||||||| ||||||||||||||| | |||||||    
T  1473630 acacactatctttgattggttaaaattcacatgggttccaccaaatcatgtgggtcccat 1473689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 6643429 - 6643367
Alignment:
Q  185 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 247  Q
    ||||||||||| ||||||| || | | ||||||||||||| | ||||||||||||||||||||    
T  6643429 tttgattggttaaaattcatataggtcccaccaaatcatgtgggtcccatataaatttggtgg 6643367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 3150238 - 3150295
Alignment:
Q  189 attggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtg 246  Q
    ||||||| |||||||||||| | ||||||||||||| |  | ||||||||||||||||    
T  3150238 attggttaaaattcacatgggtcccaccaaatcatgtggattccatataaatttggtg 3150295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 4483383 - 4483452
Alignment:
Q  177 acactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtg 246  Q
    ||||||| ||||||||||| ||||| | | || | ||||||||||||| | | |||||||||||||||||    
T  4483383 acactctctttgattggttaaaattaatacgggtcccaccaaatcatgtgggacccatataaatttggtg 4483452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 24783891 - 24783956
Alignment:
Q  185 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatc 250  Q
    ||||||| ||| ||||||| |||||| ||||||||||||| |  | ||||||||||||| ||||||    
T  24783891 tttgattcgttaaaattcatatggatcccaccaaatcatgtggattccatataaatttgatggatc 24783956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 136445 - 136377
Alignment:
Q  175 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttg 243  Q
    ||||||||| ||||||||||| ||| |||||||  | ||| ||||||||| | | ||||||||||||||    
T  136445 acacactctttttgattggttaaaactcacatgtgtcccatcaaatcatgtgtgacccatataaatttg 136377  T

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