View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14828_low_2 (Length: 432)
Name: NF14828_low_2
Description: NF14828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14828_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 59 - 416
Target Start/End: Complemental strand, 31723179 - 31722825
Alignment:
| Q |
59 |
ccgtatgtatgtatgggaagtagctattgataaaaataaagtatatcatttgtatcttaaaaataatattatgatnnnnnnnnntagaaaaatattttgt |
158 |
Q |
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| T |
31723179 |
ccgtatgtatgtatgggaagtagctattgataaaaataaaatatatcatttgtatcttaaaaataatattatgataaaaaaa--tagaaaaatattttgt |
31723082 |
T |
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| Q |
159 |
atatgccccgcgtatacactttgaaatgaagaggaaaataaaatgatacaatatatatgataggtagagagagatagaaatacaatacagcgttaaacga |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| |
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| T |
31723081 |
atatgccccgcgtatacactttgaaatgaagaggaaaataaaatgatacaatatatatgataggtagagaga--tagagatacaatacaccgttaaacga |
31722984 |
T |
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| Q |
259 |
gtgtatgaaaaagatagggtggtcaaatgtcatgctccaaaaaa-tatttcgttccaagcatattttactcgagcattgcacaattttaagctctagttt |
357 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31722983 |
gtgtatgaaaaagacagggtgttcaaatgtcatgctccaaaaaaatatttcattccaagcatattttactcgagcattgcacaattttaagctctagttt |
31722884 |
T |
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| Q |
358 |
aatctaaaaatagaaacccaaagcaaccggaagaaaagaacgcaaatttgtttgtatct |
416 |
Q |
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| T |
31722883 |
aatctaaaaatagaaactcaaagcaaccggaagaaaagaatgcaaattcgtttgtatct |
31722825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 31723228 - 31723196
Alignment:
| Q |
6 |
atacttgtagtaaattctaaactcaattaagcc |
38 |
Q |
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| T |
31723228 |
atacttatagtaaattctaaactcaattaagcc |
31723196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 888339 - 888295
Alignment:
| Q |
85 |
ttgataaaaataaagtatatcatttgtatcttaaaaataatatta |
129 |
Q |
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| T |
888339 |
ttgataaaaataaagtatatcatttgtatcttgaaaacaatatta |
888295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 31900510 - 31900469
Alignment:
| Q |
88 |
ataaaaataaagtatatcatttgtatcttaaaaataatatta |
129 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
31900510 |
ataaaaataaagtatatcatttgtatcttgaaaacaatatta |
31900469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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