View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14828_low_3 (Length: 426)
Name: NF14828_low_3
Description: NF14828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14828_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 137 - 281
Target Start/End: Complemental strand, 785416 - 785272
Alignment:
| Q |
137 |
aaatttaaaaatatcaaatcaatcatgatgctaatgaattatggtcacctaaaaaaggattttctacaaacacaatttagtagcttcatacctatgctcc |
236 |
Q |
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| T |
785416 |
aaatttaaaaatatcaaatccatcatgatcctaacgagctatggtcacttaaaaagggattttccacaaaagaaatttagtagtttcatacctatgctcc |
785317 |
T |
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| Q |
237 |
aataacattcatcaggcttgatagatttatatagctccctctgag |
281 |
Q |
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| T |
785316 |
aataacaatcatcaggcttgatagatttatatagctccccctgag |
785272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 770695 - 770783
Alignment:
| Q |
193 |
ggattttctacaaacacaatttagtagcttcatacctatgctccaataacattcatcaggcttgatagatttatatagctccctctgag |
281 |
Q |
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| T |
770695 |
ggattttctacaaacacaatttagtagtttcatacctatgctccaataacattcatcaggcttgatagatttatatagctccctctgag |
770783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 770525 - 770615
Alignment:
| Q |
17 |
aatttcaggatcacccttcactagacatttccaccagtccatttgatcatgcttggttaaaagaatagaaactgtattctgatcctctgca |
107 |
Q |
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| T |
770525 |
aatttcaggatcacccttaacaagacatttccaccagtccatttgatcatgcttggttaaaagaatagaaactgtattctgatcctctgca |
770615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 780835 - 780584
Alignment:
| Q |
23 |
aggatcacccttcactagacatttccaccagtccatttgatcatgcttggttaaaagaatagaaactgtattctgatcctctgcaaagataggttac-cc |
121 |
Q |
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| T |
780835 |
aggatcaccctttaccaaacatttccaccagtccatttgatcatgtttggttaaaagaatagaaactgtactttgatcctctgcaaacatagttttcaaa |
780736 |
T |
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| Q |
122 |
agaatgttc---acacaaaaatttaaaaatatcaaatcaatcatgatgctaatgaattatggtcacctaaaaaaggattttctacaaacacaatttag-- |
216 |
Q |
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| T |
780735 |
ataattagcaaaacaccaaaatttaaaagtatcaaatccatcatg--------gaattatggtcacataaaaaaggattttccacaaatgcaatttagta |
780644 |
T |
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| Q |
217 |
-tagcttcatacctatgctccaataacattcatcaggcttgatagatttatatagctccc |
275 |
Q |
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| T |
780643 |
atagtcaaatacctatgctccaataacattcatcagccttgataaatttatacagctccc |
780584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 785589 - 785501
Alignment:
| Q |
17 |
aatttcaggatcacccttcactagacatttccaccagtccatttgatcatgcttggttaaaagaatagaaactgtattctgatcctctg |
105 |
Q |
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| T |
785589 |
aatttcaggatcacccttaacgagacatttccaccagtccatttgatcatgtttggttaaaagaatagaaagtgtattctgatcctctg |
785501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 408
Target Start/End: Complemental strand, 780424 - 780382
Alignment:
| Q |
366 |
tataactgagtaaaagcttacatcaataattggtggctgccct |
408 |
Q |
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| T |
780424 |
tataactgagtaaaagcttacatcaataattggtggctgccct |
780382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 366 - 408
Target Start/End: Original strand, 770921 - 770963
Alignment:
| Q |
366 |
tataactgagtaaaagcttacatcaataattggtggctgccct |
408 |
Q |
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| T |
770921 |
tataactgagtaaatgcttacatcaataattggtggctgccct |
770963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 785110 - 785077
Alignment:
| Q |
375 |
gtaaaagcttacatcaataattggtggctgccct |
408 |
Q |
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| T |
785110 |
gtaaaagcttacatcaataattggtggctgccct |
785077 |
T |
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