View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14829_high_5 (Length: 234)

Name: NF14829_high_5

Description: NF14829

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14829_high_5

[»] chr4 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 149; E-Value: 8e-79

Query Start/End: Original strand, 17 - 213

Target Start/End: Original strand, 26556739 - 26556935

Alignment:

Q	17	atttgtctaccttcagatgatcacttaatggcaacatgattcttcttgtttaatggaaaatcgatagtagtacttaaaacttgaataaatacggcttgtg	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26556739	atttgtctaccttcagatgatcacttaatggcaacatgattcttcttgtttaatggaaaatcgatagtagtacttaaaacttgaataaatacggcttgtg	26556838	T

Q	117	ctttaaaaatgaccaatataattttttgagtttacttctgttaggttcgcaaataaggacaatgagaaatataaaatccttggtcgatgatgccctc	213	Q
		\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|
T	26556839	cttaaaaaatgacaaatataattggttgagtttactgatgttaggttcgcaaataagaacaatgtgaaatagataatccttggtagatgatgacctc	26556935	T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 40; E-Value: 0.00000000000008

Query Start/End: Original strand, 102 - 208

Target Start/End: Original strand, 21907457 - 21907564

Alignment:

Q	102	taaatacggcttgtgctttaaaaatgaccaa-tataattttttgagtttacttctgttaggttcgcaaataaggacaatgagaaatataaaatccttggt	200	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|
T	21907457	taaatatggcttgtgcttaaaaaatgaacaaatataatttgctgagtttgctaacgttaggttcgcaaataagaacaatgtgaaataaataatccctggt	21907556	T

Q	201	cgatgatg	208	Q
		\|\|\|\|\|\|\|
T	21907557	agatgatg	21907564	T

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