View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14829_low_3 (Length: 431)

Name: NF14829_low_3
Description: NF14829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14829_low_3
NF14829_low_3
[»] chr3 (2 HSPs)
chr3 (4-162)||(10564916-10565073)
chr3 (2-30)||(31326704-31326732)
[»] scaffold0330 (1 HSPs)
scaffold0330 (1-29)||(4036-4064)
[»] scaffold0014 (1 HSPs)
scaffold0014 (2-30)||(199260-199288)
[»] chr8 (1 HSPs)
chr8 (1-29)||(44380662-44380690)
[»] chr5 (1 HSPs)
chr5 (1-29)||(4434477-4434505)
[»] chr4 (2 HSPs)
chr4 (2-30)||(43358607-43358635)
chr4 (1-29)||(49194879-49194907)
[»] chr2 (1 HSPs)
chr2 (1-29)||(10749727-10749755)
[»] chr1 (2 HSPs)
chr1 (1-29)||(42256455-42256483)
chr1 (1-29)||(48325815-48325843)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 10565073 - 10564916
Alignment:
Q  4 gttgtacaaatatcatttctcttttagctattacttgatggtagtttataggatgcacaaatgattaaatttatttattcatatggaagtgctattttta 103  Q
    |||||| |||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10565073 gttgtaaaaatat-atttctcttttagttataacttgatggtagtttataggatgcacaaatgattaaatttatttattcatatggaagtgcaattttta 10564975  T
Q  104 ccattgatttaatagttttaaatcaaatgacttggatttattaaggacactctactagt 162  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10564974 ccatttatttaatagttttaaatcaaatgacttggatttataaaggacactctactagt 10564916  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 31326732 - 31326704
Alignment:
Q  2 tggttgtacaaatatcatttctcttttag 30  Q
    |||||||||||||||||||||||||||||    
T  31326732 tggttgtacaaatatcatttctcttttag 31326704  T

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Target: scaffold0330 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4064 - 4036
Alignment:
Q  1 atggttgtacaaatatcatttctctttta 29  Q
    |||||||||||||||||||||||||||||    
T  4064 atggttgtacaaatatcatttctctttta 4036  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 199288 - 199260
Alignment:
Q  2 tggttgtacaaatatcatttctcttttag 30  Q
    |||||||||||||||||||||||||||||    
T  199288 tggttgtacaaatatcatttctcttttag 199260  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44380662 - 44380690
Alignment:
Q  1 atggttgtacaaatatcatttctctttta 29  Q
    |||||||||||||||||||||||||||||    
T  44380662 atggttgtacaaatatcatttctctttta 44380690  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4434505 - 4434477
Alignment:
Q  1 atggttgtacaaatatcatttctctttta 29  Q
    |||||||||||||||||||||||||||||    
T  4434505 atggttgtacaaatatcatttctctttta 4434477  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 43358635 - 43358607
Alignment:
Q  2 tggttgtacaaatatcatttctcttttag 30  Q
    |||||||||||||||||||||||||||||    
T  43358635 tggttgtacaaatatcatttctcttttag 43358607  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 49194907 - 49194879
Alignment:
Q  1 atggttgtacaaatatcatttctctttta 29  Q
    |||||||||||||||||||||||||||||    
T  49194907 atggttgtacaaatatcatttctctttta 49194879  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10749727 - 10749755
Alignment:
Q  1 atggttgtacaaatatcatttctctttta 29  Q
    |||||||||||||||||||||||||||||    
T  10749727 atggttgtacaaatatcatttctctttta 10749755  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42256483 - 42256455
Alignment:
Q  1 atggttgtacaaatatcatttctctttta 29  Q
    |||||||||||||||||||||||||||||    
T  42256483 atggttgtacaaatatcatttctctttta 42256455  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 48325815 - 48325843
Alignment:
Q  1 atggttgtacaaatatcatttctctttta 29  Q
    |||||||||||||||||||||||||||||    
T  48325815 atggttgtacaaatatcatttctctttta 48325843  T

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