View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14829_low_5 (Length: 333)
Name: NF14829_low_5
Description: NF14829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14829_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 31331461 - 31331749
Alignment:
| Q |
1 |
tttattaaacaacattacacattgcatcaaattcaattattcttagcttctatttgt-----tttaacgtgttgtttctggaaagctacagaatataact |
95 |
Q |
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| T |
31331461 |
tttattaaacaacattacacattgcatcaatttcaattattcttagcttctataaatacaactttaacgtgtgttttctgtaaagctacagaatataact |
31331560 |
T |
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| Q |
96 |
tataacatcccgttaaattcctctcatttcatccacccctttctctctccaaacttgagatttccctcattcccttcctccactcacggcttcccaaatc |
195 |
Q |
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| T |
31331561 |
tgtaacatcccgttaaattcctctcatttcatccactcctttctctctccaaacttgagatttccctcatccccttcctccactcacggcttcccaaatc |
31331660 |
T |
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| Q |
196 |
acacttaatctaacatgcaagtggatctaaagaaaaacagaacaatggaaacactttgattttaccttcctccattctttcccatgaac |
284 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
31331661 |
tcacttaatctaacatgcaagtggatctaaagaaaaatagaacaatggaaagactttgatttttccttcctccattctttcccatgaac |
31331749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 31321610 - 31321581
Alignment:
| Q |
1 |
tttattaaacaacattacacattgcatcaa |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31321610 |
tttattaaacaacattacacattgcatcaa |
31321581 |
T |
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