View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1482R-Insertion-12 (Length: 904)

Name: NF1482R-Insertion-12
Description: NF1482R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1482R-Insertion-12
NF1482R-Insertion-12
[»] chr7 (2 HSPs)
chr7 (10-811)||(31260302-31261094)
chr7 (510-578)||(8745871-8745939)
[»] chr2 (2 HSPs)
chr2 (506-567)||(30841549-30841610)
chr2 (516-567)||(18203108-18203159)
[»] chr3 (6 HSPs)
chr3 (506-578)||(50196898-50196970)
chr3 (506-577)||(30130787-30130858)
chr3 (506-567)||(30135507-30135568)
chr3 (506-567)||(30141636-30141697)
chr3 (506-567)||(30145058-30145119)
chr3 (510-567)||(42643057-42643114)
[»] chr5 (2 HSPs)
chr5 (516-577)||(6423983-6424044)
chr5 (536-578)||(42042303-42042345)
[»] chr1 (2 HSPs)
chr1 (514-567)||(28843220-28843273)
chr1 (512-574)||(370787-370848)
[»] chr4 (1 HSPs)
chr4 (506-594)||(9928753-9928841)


Alignment Details
Target: chr7 (Bit Score: 675; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 10 - 811
Target Start/End: Original strand, 31260302 - 31261094
Alignment:
Q  10 aaatgactcacatactcagatcacttatcatagacttcagtaatagatcaataaaattcattactgctaagttgtttacataagccataatttttcagct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31260302 aaatgactcacatactcagatcacttatcatagacttcagtaatagatcaataaaattcattactgctaagttgtttacataagccataatttttcagct 31260401  T
Q  110 ggagcttttggatacgtgtcaatacacagatgggtctacgtcagaaagatctatcaggnnnnnnngataatattaaaaataaaaattcaacgtagatcat 209  Q
    ||||||||||||||||||||||||      ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  31260402 ggagcttttggatacgtgtcaata------tgggtctacgtcagaaagatctatcaggtttttttgataatattaaaaataaaaattcaacgtagatcat 31260495  T
Q  210 ccatcacacacacttgtacactttatgcagttaaaccttcactcataataataaatacagcccactacattgtaaatgcagttatccaccactacttttc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31260496 ccatcacacacacttgtacactttatgcagttaaaccttcactcataataataaatacagcccactacattgtaaatgcagttatccaccactactattc 31260595  T
Q  310 tatacagtcaacattttgttttttccactcatactcatactcataataataatcatgcatttctcccataaatgcataaaaaggcgtttctgagcttatt 409  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31260596 tatacagtcaacattttgttttttccactcatactcataatcataataataatcatgcatttctcccataaatgcataaaaaggcgtttctgagcttatt 31260695  T
Q  410 tgatgtctacaaaaagggtgatccagagtggacctagatcgacagtaggagttgtggaagtataacgatcaatggaggtaattttggaggagtgtt-ata 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31260696 tgatgtctacaaaaagggtgatccagagtggacctagatcgacagtaggagttgtggaagtataacgatcaatggaggtaattttggaggagtgttgata 31260795  T
Q  509 ggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagttcgaaaatctgagcaacatggaacaaataa 608  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||  |||||||||||||||||||||    
T  31260796 ggcttgaatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacggtccgagaacttgagcaacatggaacaaataa 31260895  T
Q  609 taaaccgcaaacaacttaccaacttcaacaccactcacgtttagcgtgagccggggtccaattcccaaattgcaatccttaacccagctcacataccatg 708  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31260896 caaaccgcaaacaacttaccaacttcaacaccactcacgtttagcgtgagccggggtccaattcccaaattgcaatccttaa-ccagctcacataccatg 31260994  T
Q  709 ttaaatagggcttcgataagtgcaacacaagacttctcaagagatcactcactattattctagtttcaagcacgttttaactgcagagttctgatgagat 808  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||    
T  31260995 ttaaata-ggcttagataagtgcaacacaagacttctcaagagatcactcactattactctag-ttcaagcacg-tttaactgcagagttctgatgagat 31261091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 510 - 578
Target Start/End: Original strand, 8745871 - 8745939
Alignment:
Q  510 gcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagt 578  Q
    ||||||||||||||| |||| |||| ||||| |||||||||| || |||||||||||| ||||||||||    
T  8745871 gcttggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttatacactcaacagt 8745939  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 30841549 - 30841610
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||| ||||||||||||| | || |||||||||| |||||||||| |||||||||||||||    
T  30841549 ataggtttggatctcatcccacaagttagtttaaaggatgaggatactcaaacatatttata 30841610  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 567
Target Start/End: Original strand, 18203108 - 18203159
Alignment:
Q  516 atctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||| |||| |||||| ||||||||||| |||| |||||||||||||    
T  18203108 atctcatcctaaaagttagttcaaatgatgagggtatttaaacatatttata 18203159  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 506 - 578
Target Start/End: Complemental strand, 50196970 - 50196898
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagt 578  Q
    ||||| ||||||||||||| |||| |||| | ||| ||||||| |||| ||||||||||||| ||||||||||    
T  50196970 ataggtttggatctcatcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaacagt 50196898  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 506 - 577
Target Start/End: Original strand, 30130787 - 30130858
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacag 577  Q
    ||||| ||||||||||||| ||||| ||| | ||||||||| |||| |||| |||||||||| |||||||||    
T  30130787 ataggtttggatctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaacag 30130858  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 30135507 - 30135568
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| || |||| ||||||||||    
T  30135507 ataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttata 30135568  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 30141636 - 30141697
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| || |||| ||||||||||    
T  30141636 ataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttata 30141697  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 30145058 - 30145119
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| || |||| ||||||||||    
T  30145058 ataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttata 30145119  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 567
Target Start/End: Complemental strand, 42643114 - 42643057
Alignment:
Q  510 gcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||||||||  ||||||||  ||||||||||| | |||||||| |||||||||    
T  42643114 gcttggatctcatctcaaaaattaacttaaatgatgatggtattcaaatatatttata 42643057  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 6424044 - 6423983
Alignment:
Q  516 atctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacag 577  Q
    ||||||||| ||||| ||| ||||| ||||| |||| ||||||||||||||| |||||||||    
T  6424044 atctcatcctaaaaactagcttaaaagatgatgatactcaaacatatttatacactcaacag 6423983  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 536 - 578
Target Start/End: Complemental strand, 42042345 - 42042303
Alignment:
Q  536 ttaaatgatgaggatattcaaacatatttataaactcaacagt 578  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||    
T  42042345 ttaaatgatgaagatactcaaacatatttatacactcaacagt 42042303  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 567
Target Start/End: Original strand, 28843220 - 28843273
Alignment:
Q  514 ggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||||  ||||| ||||||||| |||||||||||||||| |||||||||    
T  28843220 ggatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttata 28843273  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 512 - 574
Target Start/End: Complemental strand, 370848 - 370787
Alignment:
Q  512 ttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaa 574  Q
    |||||||||||| ||||  ||||||||||||| |||| || ||||||||||||||| ||||||    
T  370848 ttggatctcatctaaaag-ttagtttaaatgacgagggtactcaaacatatttatacactcaa 370787  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 9928753 - 9928841
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagttcgaaaatctgagcaa 594  Q
    ||||||||| |||| |||| ||||||||| |||||  || ||| || ||||||||||||||| ||||||||   || ||||||||||||    
T  9928753 ataggcttgtatctaatcccaaaaattagcttaaaaaattagggtactcaaacatatttatacactcaacaacccggaaatctgagcaa 9928841  T

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