View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482R-Insertion-13 (Length: 938)
Name: NF1482R-Insertion-13
Description: NF1482R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482R-Insertion-13 |
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Alignment Details
Target: chr5 (Bit Score: 677; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 12 - 890
Target Start/End: Original strand, 10447352 - 10448237
Alignment:
| Q |
12 |
ttgataaaagtttataaagagaagacactttacatcctataagctggctttacaaggatgagttatacccaaatttcaaa--atcctattatttttattc |
109 |
Q |
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|||||||||||||||||| | |||||||||| |||| ||||||| || ||||| | ||||| ||||||||||||||||| ||||||| |||||||||| |
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| T |
10447352 |
ttgataaaagtttataaaaa-aagacacttttcatcttataagccggttttacgaagatgaattatacccaaatttcaacgcatcctatcatttttattc |
10447450 |
T |
|
| Q |
110 |
aaatttagtaaagtatatataattacttgcaacctttacaggtaggcttctattatatcggttcatgcggtgaaggttatctttttatgctacttatgac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10447451 |
aaatttagtaaagtatatataattacttgcaacctttacaggtaggcttctattatatcggttcatgcggtgaaggttatctttttatgctacttatgac |
10447550 |
T |
|
| Q |
210 |
aaaagagtagtttcatatctcattatgattaggtcattgtggggcccacattgaattgaaaatgggaaggaaaa-gtttcctgnnnnnnnnnnnnnnnnn |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| ||| |
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| T |
10447551 |
aaaagagtagtttcatatctcattatgattaggtcattgtggggcccacatagaattgaaaatgggaagaaaaaagttttctgaaaaaactaaaaacaaa |
10447650 |
T |
|
| Q |
309 |
ngtgttacctttggtaattgtagtaatttccatgaccctcttatgtttttaaggttctttcttcaatgtttcactctttaattgcacagattcgattcca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10447651 |
agtgttacctttggtaattgtagtaatttccatgaccctcttatgattttaaggttctttcttcaatgtttcactctttaattgcacagattcgattcca |
10447750 |
T |
|
| Q |
409 |
tttagaaacatgtggcttgtaatgaaagaaagcatcttaaacatactgtaataatttgtaagttccttttatatttcaatttgactttgatttgcttaat |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10447751 |
tttagaaacatgtggcttgtaatgaaagaaagcatcttaaacatactgtaataatttgtaagttccttttatatttcaatttgactttgatttgcttaat |
10447850 |
T |
|
| Q |
509 |
tgtagaaaacccaattcccaatttaatatgctttggattctccatgcttaaaaaatgttgctttctttgcttttgatgattttagagttaaatattcaac |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10447851 |
tgtagaaaacccaattcccaatttaatatgctttggattctcaatgcttaaaaattgttgctttctttgcttttgatgattttagagttaaatattcaac |
10447950 |
T |
|
| Q |
609 |
atggcttgtaaatgggtgcttcaagaataataaataatctattcttttttctttcttctgggtcattttgtggttttcttgttgatgaagattgcaggag |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10447951 |
atggcttgtaaatgggtgcttcaagaataataaataatctattcttttttctttcttctgggtcattttgtggttttcttgttgatgaagattgcaggag |
10448050 |
T |
|
| Q |
709 |
tatcattatcaactg--------gtgctagtgtgctactatcattcaatttgtaagagccctttaattttcaatgaaattgggcccttcaccattcacca |
800 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10448051 |
tatcattatcaactggtgctagcgtgctagtgtgctactatcattcaatttgtaagagccctttaattttcaatgaaatt-ggcccttcaccattcacca |
10448149 |
T |
|
| Q |
801 |
aaaacagataaggatgctttttctgttggtgctattcagttagaatcacttaaactttatttttggaagtacataaaaatgttccctttt |
890 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| |
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| T |
10448150 |
aaaacagataaggatgctttttctgttagtgctattcagttagaatcacttaa--cttatttttgaagttacataaaaatgttccctttt |
10448237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 2716377 - 2716455
Alignment:
| Q |
12 |
ttgataaaagtttataaagagaagacactttacatcctataagctggctttacaaggatgagttatacccaaatttcaa |
90 |
Q |
| |
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||||||||||||||||||||| ||||||| || | |||||||||| ||| |||||||||||| ||| |||||||| |
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| T |
2716377 |
ttgataaaagtttataaagaggagacactcctcaccttataagctggttttgtaaggatgagttaggccccaatttcaa |
2716455 |
T |
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