View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482R-Insertion-5 (Length: 390)
Name: NF1482R-Insertion-5
Description: NF1482R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482R-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 386
Target Start/End: Original strand, 15241566 - 15241925
Alignment:
| Q |
14 |
tctttgatggagtgaatttttgacgtgtgttggattatcatgtgatttagagtaatttgaattcatagagtaggattaatcaaattgtttcaaataataa |
113 |
Q |
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| T |
15241566 |
tctttgatggagtgaatttttgatgtgtgttggattatcatgtgatttagagtaatttgaattcatagagtaggattaatcaaattgtttca---aataa |
15241662 |
T |
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| Q |
114 |
tttcgatgaattggttttaaagtggagaccactatgaggcactatctaatttattatcccttcttgttgttatatgataatgtgacgttaatgatgttct |
213 |
Q |
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| T |
15241663 |
tttcgatgaattggttttaaagtggagaccactatgaggcactatctaat---ttatcccttcttgttgttatatgataatgtgacgttaatgatgttct |
15241759 |
T |
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| Q |
214 |
tttgttgcagtaaatcgtttacaatattgctgtttttcaatactctctattagcataaaatgttgtcaaataggtctatatatagtggtgtggtgtgtag |
313 |
Q |
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| T |
15241760 |
tttgttgcagtaaatcgtttacaa---tgttgttttgcaatactctctattagcacaaaatgttgtcaaataggtc----tatagtggtgtggtgtgtag |
15241852 |
T |
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| Q |
314 |
ttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgatattttgttctgtgttttggtc |
386 |
Q |
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| T |
15241853 |
ttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgatattttgttctgtgttttggtc |
15241925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 34227386 - 34227444
Alignment:
| Q |
307 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgat |
365 |
Q |
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| T |
34227386 |
tgtgtagtgaaatttgaacaaactgttattttccatgatcggcaattgacaacactgat |
34227444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 33651744 - 33651792
Alignment:
| Q |
307 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttga |
355 |
Q |
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| T |
33651744 |
tgtgtagctaaatttgaacaaactactattttctgtgatctgcaattga |
33651792 |
T |
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