View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482R-Insertion-6 (Length: 417)
Name: NF1482R-Insertion-6
Description: NF1482R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482R-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 9417984 - 9418200
Alignment:
| Q |
9 |
caaatatggattggtaacaggtatctttgatctgtgagatggactttgaaataactttttagttatcccagtcaatacagcactaccaataggctacaag |
108 |
Q |
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| T |
9417984 |
caaatatggattggtaacaggtatctttgatctgtgagatggactttgaaataactttttagttatcccagtcaatacagcactaccaataggctacaag |
9418083 |
T |
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| Q |
109 |
gtttataaaaaattgttagttaaacatatcacttttcaagtaagaaaaaacatgttaaaattattattacctctgagttggatgaccttctaaagttgct |
208 |
Q |
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| T |
9418084 |
gtttataaaaaattgttagttaaacatgtcacttttcaattaagaaaaaacatgttaaaattattattacctctgagttggatgaccttctaaagttgct |
9418183 |
T |
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| Q |
209 |
cttccaaagcatcatag |
225 |
Q |
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| T |
9418184 |
cttccaaagcatcatag |
9418200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 417
Target Start/End: Original strand, 17813463 - 17813854
Alignment:
| Q |
12 |
atatggattggtaacaggtatctttgatctgtgagatggactttgaaataactttttagttatcccagtcaatacagcactaccaataggctacaaggtt |
111 |
Q |
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| T |
17813463 |
atatggattggtaacaggtatccttgatatgtgagatggactttgaaataactttttagttatcccagtcaatccagtactgccaataggctacaaggat |
17813562 |
T |
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| Q |
112 |
tataaaaaattgttagttaaacatatcacttttcaagtaagaaaaaacatgttaaaattattattacctctgagttggatgaccttctaaagttgctctt |
211 |
Q |
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| T |
17813563 |
tat-aaagatcgttaattaaacatatcacttttcaagtaagaaaaaacacgttaaaataattattacctctgagttggatgaccttat-aagttgctctt |
17813660 |
T |
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| Q |
212 |
ccaaagcatcatagcagaagtgttgtccttaacacctgatttttcacctgtggtccactcttttgggagaggtggtttcatttcaaacatagtgttgtta |
311 |
Q |
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| T |
17813661 |
gcaaaacatcatagcaaaatcgttgtccttaa------------cacctgtgttccactcttttaggagagttggtttcattccaaatataatgttgcca |
17813748 |
T |
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| Q |
312 |
tacattccattcattgctgacctatgcattttctttccttttgtgtcatcatcactgtcagacacatccacaataacattgttaaagtcatcaatgattt |
411 |
Q |
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| T |
17813749 |
tacattccattcaacactgacctatgcactttcttttcttttgtgtcattatcattgtcagacacatccacaataacattgttaaggtcatcaaagattt |
17813848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 12003597 - 12003378
Alignment:
| Q |
9 |
caaatatggattggtaacaggtatctttgatctgtgagatggactttgaaataactttttagttatcccagtcaatacagcactaccaataggctacaag |
108 |
Q |
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| T |
12003597 |
caaatatggattggtaacatgtatctttgatctgtgagatggactttgaaataactttttagttatcctagtcaatacagcactaccaataggctacaag |
12003498 |
T |
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| Q |
109 |
gtttataaaaaattgttagttaaacatatcacttttcaagtaagaaaaaacatgttaaaattattattacctctgagttggatgaccttctaaagttgct |
208 |
Q |
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| T |
12003497 |
gtttataaaaaattgttagttaaacatatcacttttcaagtaagaaaaaacatgtt-aaattattattacctctgagttggatgaccttctaaagttgct |
12003399 |
T |
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| Q |
209 |
cttccaaagcatcatagcaga |
229 |
Q |
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| T |
12003398 |
cttgcaaagcatcatagcaga |
12003378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 222 - 417
Target Start/End: Complemental strand, 12002139 - 12001944
Alignment:
| Q |
222 |
atagcagaagtgttgtccttaacacctgatttttcacctgtggtccactcttttgggagaggtggtttcatttcaaacatagtgttgttatacattccat |
321 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
12002139 |
atagcaaaagtgttgtccttaacacctgatttttcacctgtggtccactcttttaggagaggtggtttcattccaaatatagtgttattatacattccat |
12002040 |
T |
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| Q |
322 |
tcattgctgacctatgcattttctttccttttgtgtcatcatcactgtcagacacatccacaataacattgttaaagtcatcaatgatttctgttg |
417 |
Q |
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| T |
12002039 |
tcatcactgacctatgcactttctttccttttgtgtcatcatcaccgtcagacacatccacaataacattgttaaagtcatcaatgatttttgttg |
12001944 |
T |
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