View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1482R-Insertion-9 (Length: 515)
Name: NF1482R-Insertion-9
Description: NF1482R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482R-Insertion-9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 509
Target Start/End: Complemental strand, 10599801 - 10599300
Alignment:
| Q |
8 |
aatgatgatgcgattgatttgtttttggagatgttggtgagtagtgggtatgttccggataggtttacgttaactgggttgatatctgtgtgtgctgaga |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| || |||||||||| |
|
|
| T |
10599801 |
aatgatgaagcgattgatttgtttttggaaatgttggtgagtagtgggtatgtgccggatagatttacgttgactgggttgatatcggtttgtgctgaga |
10599702 |
T |
|
| Q |
108 |
ttcagtttttgtcgcttgggaaggagttgcattcgtgggttattaggtcgggtttggttttggatttgtgtgttaggtgtagtttggttgatatgtatgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10599701 |
ttcagtttttgtcgcttgggaaggagttgcattcgtgggttattaggtcgggtttggttttggatttgtgtgttgggtgtagtttggttgatatgtatgc |
10599602 |
T |
|
| Q |
208 |
gaaatgtggattggtgcgagaggctaggaaagtgtttgatggtatgagagagcataatgtgatgtcgtggacggcacttattaatggatatgtaagaggc |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
10599601 |
gaaatgtggattggtgcaagaggctaggaaagtgtttgatggtatgagggagcataatgtgatgtcgtggacggctcttgttaatggatatgtacgaggc |
10599502 |
T |
|
| Q |
308 |
ggtggtggatatgaacgggaagctatgagattgtttagcgatatgttgcttcagggttgtgttgcgccaaattgctttacgttttctggtgttcttaagg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| || ||||||||||| || ||||||||||||| |
|
|
| T |
10599501 |
ggtggtggatatgaacgggaagctatgagaatgtttagtaatatgttgcttcagggtggtgttgcgccgaactgctttacgttctccggtgttcttaagg |
10599402 |
T |
|
| Q |
408 |
cttgtgcgagtcttcctaattttgattttggtgaacaagttcacgggcaaacgattaaattaggtctttctgcgattgattgtgtagggaatggtcttgt |
507 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10599401 |
cttgtgcgagtcttcctgattttgattttggtgaacaggttcatgggcaaacgattaaattaggtctttctgcaattgattgtgtagggaatggtcttgt |
10599302 |
T |
|
| Q |
508 |
ta |
509 |
Q |
| |
|
|| |
|
|
| T |
10599301 |
ta |
10599300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University