View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_high_11 (Length: 333)
Name: NF1482_high_11
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 18062037 - 18062355
Alignment:
| Q |
11 |
catcatcattgccactatccttttctttatcactctcactatccgtttcaaatctgacttcaaatctaacatcaaatctgtnnnnnnntctgtaatcaaa |
110 |
Q |
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| T |
18062037 |
catcatcattgccactatccttttctttatcactatca------gtttcaaatctgacttcaaatctaacatcaaatctgtaatcaaatctgtaatcaaa |
18062130 |
T |
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| Q |
111 |
tctataactggacttgtggaatttttcatttttatcctcctcctgcggannnnnnncaatgatattctc------------tataatggaactatcaata |
198 |
Q |
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| T |
18062131 |
tctataactggacttgtgtaatttttcatttttatcctcctcctgcggattattctcattgttattctcaatgatattatgtataatggaactatcaata |
18062230 |
T |
|
| Q |
199 |
ccgatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaataactattactatcgctaactaaaaaagttttat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18062231 |
ccgatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaataactattactatcgctaactaaaaaagttttat |
18062330 |
T |
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| Q |
299 |
cagatagtaaattcggtatgttcat |
323 |
Q |
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| T |
18062331 |
cagatagtaaattcggtatgttcat |
18062355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 167 - 323
Target Start/End: Original strand, 27008459 - 27008615
Alignment:
| Q |
167 |
caatgatattctctataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaata |
266 |
Q |
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| T |
27008459 |
caatgatattatgtataatggaactatcaataaagatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaata |
27008558 |
T |
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| Q |
267 |
actattactatcgctaactaaaaaagttttatcagatagtaaattcggtatgttcat |
323 |
Q |
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| T |
27008559 |
actattactatcgctaactaaaaaagttttatcagatagtaaattagatatgttcat |
27008615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 27008402 - 27008434
Alignment:
| Q |
122 |
acttgtggaatttttcatttttatcctcctcct |
154 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27008402 |
acttgtggaatttttcatttttatcctcctcct |
27008434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 9195603 - 9195565
Alignment:
| Q |
195 |
aataccgatttcagaaagcatataaccttcaatacaact |
233 |
Q |
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| T |
9195603 |
aataccgatttcagaaaggatataaccttcaatacaact |
9195565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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