View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1482_high_16 (Length: 292)

Name: NF1482_high_16
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1482_high_16
NF1482_high_16
[»] chr6 (1 HSPs)
chr6 (3-292)||(6722284-6722573)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 6722573 - 6722284
Alignment:
Q  3 gattaaattgaaatttgaaacaagaaaatttataaaagagatggggtaaattgagtaccttaatgaaacaactatcctgaaatttgcaatacccttttcc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  6722573 gattaaattgaaatttgaaacaagaaaatttataaaagagatggggtaaattgagtaccttaaagaaacaactatcctgaaatttgcaatacacttttcc 6722474  T
Q  103 aaagttgaaatatttgcaatccatagatctaaaaggacaaaataaatactaacctcaaaacttaatcttatagcatggactctgtataaactaattgtac 202  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||    
T  6722473 gaagttgaaatatttgcaatccatagatctaaaaggacaaaataaatactaacctcaaaacttaatcatatagcatggactctatataaaccaactgtac 6722374  T
Q  203 gtataaaacataagaacttaagtccctttggttaacaatccaaccccaactcaaattgaataatagtaataatgataatacgttaatatc 292  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  6722373 gtataaaacataagaacttaagtccctttggttaaaaatccaaccccaactcaaattgaataatattaacaatgataatacgttaatatc 6722284  T

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