View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_high_18 (Length: 265)
Name: NF1482_high_18
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 8391513 - 8391684
Alignment:
| Q |
82 |
ttagatagattatatgtttaatactgacaagaattttttgaactactcggaagaacagatatctatgatttaaattataaagtattttgtttggaaaaat |
181 |
Q |
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| T |
8391513 |
ttagatagattatatgtttaatcctgacaagaattttttgaactacttggaagaatagatatctatgatttaaattataaagtattttgtttagaaaaat |
8391612 |
T |
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| Q |
182 |
aatacaaaactgtgagaagttttgtataataacgggccaaaaaagtccaagagggcttttataatttatttt |
253 |
Q |
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| T |
8391613 |
aatacaaaactgtgagaagttttgtataatcacgggccaaaaaagtccaagagggcttttataatttatttt |
8391684 |
T |
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Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8390738 - 8390827
Alignment:
| Q |
1 |
ccagctctccaaaaccatattctgcggggttgaactgtggtcttcgtgcttaatcaattgaacaatttgaactacccatcattagataga |
90 |
Q |
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| T |
8390738 |
ccagctctccaaaaccatattctgcggggttgaactgtggtcttcttgcttaatcaattgaacaatttgaagtacccatcattagataga |
8390827 |
T |
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