View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_high_20 (Length: 252)
Name: NF1482_high_20
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_high_20 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4163630 - 4163881
Alignment:
| Q |
1 |
attttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaa |
100 |
Q |
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| T |
4163630 |
attttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaa |
4163729 |
T |
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| Q |
101 |
ctatcccaaattgttgatccagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgc |
200 |
Q |
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| T |
4163730 |
ctatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgc |
4163829 |
T |
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| Q |
201 |
ttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttcc |
252 |
Q |
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| T |
4163830 |
ttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttcc |
4163881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 4134476 - 4134717
Alignment:
| Q |
5 |
tcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactat |
104 |
Q |
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| T |
4134476 |
tcactttttcttgctacaaaagcaatttgcttacctgtaactttattagatgcaattttcatcgatggaacagctgaatctgcagggtgtgtgaaactat |
4134575 |
T |
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| Q |
105 |
cccaaattgttgatccagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgt |
204 |
Q |
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| T |
4134576 |
cccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tgaaatgtttgt |
4134669 |
T |
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| Q |
205 |
tgaccaaatgatgctaccattttctttgttcaatattacaagatttcc |
252 |
Q |
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| T |
4134670 |
tgaccaaatgatgataccatttggtttgttcaatattacaagatttcc |
4134717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 4145278 - 4145519
Alignment:
| Q |
5 |
tcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactat |
104 |
Q |
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| T |
4145278 |
tcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactat |
4145377 |
T |
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| Q |
105 |
cccaaattgttgatccagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgt |
204 |
Q |
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| T |
4145378 |
cccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tgaaatgtttgt |
4145471 |
T |
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| Q |
205 |
tgaccaaatgatgctaccattttctttgttcaatattacaagatttcc |
252 |
Q |
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| T |
4145472 |
tgaccaaatgatgctgccatttggtttgttcaaaattacaagatttcc |
4145519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 4123931 - 4124172
Alignment:
| Q |
5 |
tcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactat |
104 |
Q |
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| T |
4123931 |
tcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactat |
4124030 |
T |
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| Q |
105 |
cccaaattgttgatccagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgt |
204 |
Q |
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| T |
4124031 |
cccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaa----ga--tgaaatgtttgt |
4124124 |
T |
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| Q |
205 |
tgaccaaatgatgctaccattttctttgttcaatattacaagatttcc |
252 |
Q |
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| T |
4124125 |
tgaccatataataacaccatttggtttgttcaatattacaagatttcc |
4124172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 4153281 - 4153460
Alignment:
| Q |
5 |
tcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactat |
104 |
Q |
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|||||||||||||||||||| ||||| ||||| || ||| ||| |||| |||||||||||| ||||||||||| ||||| |||||||| |||||||||| |
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| T |
4153281 |
tcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactat |
4153380 |
T |
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| Q |
105 |
cccaaattgttgatccagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaa |
184 |
Q |
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|||| ||||||| ||| ||| |||| || || | ||||||||||||| |||| ||||||||||||| |||||| ||||| |
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| T |
4153381 |
cccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaa |
4153460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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