View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_high_21 (Length: 250)
Name: NF1482_high_21
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 35631410 - 35631194
Alignment:
| Q |
12 |
aaatataacatttatgtgcaaacacccctcctcaaatttaaaactaagtcaagccttgcaaattaaaaagtttaaatatcaagaatttagatataaaaat |
111 |
Q |
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| T |
35631410 |
aaatataacatttatgtgcaaacacccctcctcaaatttaaaactaagtcaagccttgcaaattaaaaagtttaaatatcaagaatttagatataaaaat |
35631311 |
T |
|
| Q |
112 |
gaattctctgtgatttgatttgaagaattggacagtagggatacaaaaaggatagctgcaagtttaaaaaattataaagctgaatttgttgcatagaatg |
211 |
Q |
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| T |
35631310 |
gaattctctgtgatttgatttgaagaattggacagtagggatacaaaaaggatagctgcaagtttaaaaaattataaagctgaatttgttgcatagaatg |
35631211 |
T |
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| Q |
212 |
aataaaatggggcacaa |
228 |
Q |
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||||||||||||||||| |
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| T |
35631210 |
aataaaatggggcacaa |
35631194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 16956103 - 16955941
Alignment:
| Q |
56 |
taagtcaagccttgcaaattaaaaagtttaaatatcaagaatttagatataaaaa-tgaattctctgtgatttgatttgaagaattggacagtagggata |
154 |
Q |
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|||| |||||||| ||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||| || ||| |
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| T |
16956103 |
taagccaagccttacaaattacaaagtttaaacatctcaaatttagatataaaaaatgaattctctgtgatttgatttaaaggattggacgtcagttata |
16956004 |
T |
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| Q |
155 |
caaaaaggatagctgcaagtttaaaaaattataaagctgaatttgttgcatagaatgaataaa |
217 |
Q |
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| T |
16956003 |
caaaaaggatagctgcaagtttaaaaaactaaaaatctgaatttgttgcatagaatgaataaa |
16955941 |
T |
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