View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_high_25 (Length: 237)
Name: NF1482_high_25
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_high_25 |
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| [»] scaffold0867 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 22070823 - 22070620
Alignment:
| Q |
19 |
aatatattcatacttaaatttaggacagataatcaagctctaattaaaaactgaaataggatcattcaattatttgggcataatatctgtatattttgat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22070823 |
aatatattcatacttaaatttaggacagataatcaagctctaattaaaaactgaaataggatcattcaattatttgggcataatatctgtatattttgat |
22070724 |
T |
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| Q |
119 |
atactatacctgtataccatgcttcagttttgttaaaaatgttgtcaagaccaaatacataatcactcaagtataatcaaattcaaatcaaagccaccat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22070723 |
atactatacctgtataccatgcttcagttttgttaaaaatgttgtcaagaccaaatacataatcactcaagtataatcaaattcaaatcaaagccaccat |
22070624 |
T |
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| Q |
219 |
gtga |
222 |
Q |
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|||| |
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| T |
22070623 |
gtga |
22070620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 22082247 - 22082172
Alignment:
| Q |
29 |
tacttaaatttaggacagataatcaagctctaattaaaaactgaaataggatcattcaattatttgggcataatatctgta |
109 |
Q |
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||||||||||||||||||||| ||| ||| |||| ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
22082247 |
tacttaaatttaggacagatattcatgct----ttaacaac-gaaataggatcattcatttatttgggcataatatctgta |
22082172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 22064211 - 22064155
Alignment:
| Q |
168 |
accaaatacataatcactcaag--tataatcaaattcaaatcaaagccaccatgtga |
222 |
Q |
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| T |
22064211 |
accaagtacataatcactcaaaaatataatcaaattcaaatcaaagccaccatgtga |
22064155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 660560 - 660602
Alignment:
| Q |
19 |
aatatattcatacttaaatttaggacagataatcaagctctaa |
61 |
Q |
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|||||||||||||||||||| | |||||||||||||| ||||| |
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| T |
660560 |
aatatattcatacttaaattcatgacagataatcaaggtctaa |
660602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 22101058 - 22101009
Alignment:
| Q |
172 |
aatacataatcactcaag--tataatcaaattcaaatcaaagccaccatg |
219 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
22101058 |
aatacataatcactcaaaaatataatcaaattcaaatcaaatccaccatg |
22101009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 4174 - 4223
Alignment:
| Q |
172 |
aatacataatcactcaag--tataatcaaattcaaatcaaagccaccatg |
219 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
4174 |
aatacataatcactcaaaaatataatcaaattcaaatcaaatccaccatg |
4223 |
T |
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