View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1482_high_3 (Length: 449)

Name: NF1482_high_3
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1482_high_3
NF1482_high_3
[»] chr8 (3 HSPs)
chr8 (177-332)||(10867436-10867591)
chr8 (22-118)||(10867292-10867388)
chr8 (390-431)||(10867649-10867690)
[»] chr5 (2 HSPs)
chr5 (47-86)||(7464151-7464190)
chr5 (46-86)||(42506205-42506245)
[»] chr7 (1 HSPs)
chr7 (40-86)||(19491936-19491982)
[»] chr6 (1 HSPs)
chr6 (40-86)||(20715814-20715860)
[»] chr2 (1 HSPs)
chr2 (52-106)||(27597310-27597364)
[»] scaffold0063 (1 HSPs)
scaffold0063 (50-86)||(52194-52230)
[»] scaffold0013 (1 HSPs)
scaffold0013 (18-86)||(41569-41637)
[»] chr3 (1 HSPs)
chr3 (54-106)||(41143571-41143623)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 10867436 - 10867591
Alignment:
Q  177 gttaaaacatcatttcacataaaatatttttataatttttattacttagtgaaaataaaaaagaatatgggtttggattagagttctctgcagtnnnnnn 276  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||          
T  10867436 gttaaaacatcatttcacatacaatatttttataatttttattacttagtgaaaataaaaaagaatatgggtttggactagggttctctgcagtaaaaaa 10867535  T
Q  277 ntattttgcattcacgcattcggttcatactttgtcattagatcaagatcgaacgg 332  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10867536 atattttgcattcacgcattcagttcatactttgtcattagatcaagatcgaacgg 10867591  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 10867292 - 10867388
Alignment:
Q  22 actacaacaataaacatgattataggaaaaatttgtttaaggttacaattgagataatgaaaaaggcacgccaaaatctcatattgatattctccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10867292 actacaacaataaacatgattataggaaaaatttgtttaaggttacaattgagataatgaaaaaggcacgccaaaatttcatattgatattctccct 10867388  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 10867649 - 10867690
Alignment:
Q  390 ctgatctgttcaatcatgatccaacgacggcagagatgtcgc 431  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  10867649 ctgatttgttcaatcatgatccaacgacggcagaggtgtcgc 10867690  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 7464151 - 7464190
Alignment:
Q  47 gaaaaatttgtttaaggttacaattgagataatgaaaaag 86  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  7464151 gaaaaatttgtttaagggtataattgagataatgaaaaag 7464190  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 42506245 - 42506205
Alignment:
Q  46 ggaaaaatttgtttaaggttacaattgagataatgaaaaag 86  Q
    ||||||| |||||||||| || |||||||||||||||||||    
T  42506245 ggaaaaagttgtttaagggtataattgagataatgaaaaag 42506205  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 19491982 - 19491936
Alignment:
Q  40 attataggaaaaatttgtttaaggttacaattgagataatgaaaaag 86  Q
    ||||||||||||| |||||||| | || |||||||||||||||||||    
T  19491982 attataggaaaaaattgtttaaaggtataattgagataatgaaaaag 19491936  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 20715860 - 20715814
Alignment:
Q  40 attataggaaaaatttgtttaaggttacaattgagataatgaaaaag 86  Q
    ||||||| ||||| |||||||||| || |||||||||||||||||||    
T  20715860 attatagaaaaaaattgtttaagggtataattgagataatgaaaaag 20715814  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 27597364 - 27597310
Alignment:
Q  52 atttgtttaaggttacaattgagataatgaaaaaggcacgccaaaatctcatatt 106  Q
    |||||||||||| || |||||| |||||||||||| ||  |||||||||||||||    
T  27597364 atttgtttaaggctataattgaaataatgaaaaagtcagtccaaaatctcatatt 27597310  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 52230 - 52194
Alignment:
Q  50 aaatttgtttaaggttacaattgagataatgaaaaag 86  Q
    |||||||||||||| || |||||||||||||||||||    
T  52230 aaatttgtttaagggtataattgagataatgaaaaag 52194  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 41569 - 41637
Alignment:
Q  18 aatgactacaacaataaacatgattataggaaaaatttgtttaaggttacaattgagataatgaaaaag 86  Q
    |||||| ||||||| || | | ||||||| ||||| |||||||||| || ||||| |||||||||||||    
T  41569 aatgacaacaacaacaatctttattatagaaaaaagttgtttaagggtataattgggataatgaaaaag 41637  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 41143571 - 41143623
Alignment:
Q  54 ttgtttaaggttacaattgagataatgaaaaaggcacgccaaaatctcatatt 106  Q
    |||||||||| || |||| |||||| ||||||||||  |||||||||||||||    
T  41143571 ttgtttaagggtataattaagataaagaaaaaggcagcccaaaatctcatatt 41143623  T

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