View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_high_9 (Length: 368)
Name: NF1482_high_9
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 24278701 - 24278362
Alignment:
| Q |
13 |
aatatctataagcagtgacgtaaccag-acactcaaacctcatgtttcaaacatttgagttattgggtctcttgagttagtggtgcnnnnnnnntcaagg |
111 |
Q |
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| T |
24278701 |
aatatctataagcagtgacgtaaccgggacactctaacctcatgtttcaaacatttgagttattgggtctcttgagttagtggtgcaaaaaaaatcaagg |
24278602 |
T |
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| Q |
112 |
gcttttaattacaaaatacatgaatatatatgttcannnnnnna-gttaaggaggttaactgtacccacatcaaatggtctataagaatcaaacaaattg |
210 |
Q |
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|||||||| |||||||||||||||||||| ||| | | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24278601 |
gcttttaaatacaaaatacatgaatatat--gttaatttttttaagttaagggggttaactatacccacatcaaatggtctataagaatcaaacaaattg |
24278504 |
T |
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| Q |
211 |
ataaaagaaatattcaaagatcaaattgactaagaaaacacacatctattgttattaatatggatcacacattttagaaccaaagtgaatatttattaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24278503 |
ataaaagaaatattcaaagatcaaattgactaagaaaacacacatctattgttattaatatggatcacacattttagaaccaaagtgaatatttattaaa |
24278404 |
T |
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| Q |
311 |
gaaaagactataagaaggtaccatgtaggggagggaagacac |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
24278403 |
gaaaagactataagaaggtaccatgtaggggagggaagacac |
24278362 |
T |
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