View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1482_low_1 (Length: 719)

Name: NF1482_low_1
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1482_low_1
NF1482_low_1
[»] chr2 (7 HSPs)
chr2 (122-405)||(27150370-27150652)
chr2 (471-705)||(27150718-27150952)
chr2 (123-405)||(7703140-7703419)
chr2 (18-102)||(27150166-27150246)
chr2 (157-267)||(24479971-24480077)
chr2 (471-705)||(7702827-7703074)
chr2 (308-405)||(24479853-24479950)
[»] chr1 (10 HSPs)
chr1 (123-404)||(39367255-39367538)
chr1 (124-281)||(12190526-12190681)
chr1 (614-705)||(18308544-18308636)
chr1 (478-668)||(17113362-17113554)
chr1 (18-102)||(12190775-12190857)
chr1 (473-598)||(18308690-18308826)
chr1 (338-405)||(18308894-18308961)
chr1 (471-652)||(39367605-39367812)
chr1 (71-102)||(39367068-39367099)
chr1 (670-705)||(39367810-39367845)
[»] chr8 (5 HSPs)
chr8 (169-405)||(6224027-6224250)
chr8 (492-702)||(14998013-14998228)
chr8 (600-666)||(6223797-6223863)
chr8 (487-536)||(6223896-6223945)
chr8 (471-536)||(17633932-17633997)
[»] chr4 (7 HSPs)
chr4 (209-405)||(24558247-24558437)
chr4 (471-680)||(37750460-37750682)
chr4 (126-405)||(37744223-37744485)
chr4 (471-686)||(37744552-37744793)
chr4 (143-265)||(21318656-21318774)
chr4 (18-102)||(24557960-24558040)
chr4 (346-405)||(37750335-37750394)
[»] chr3 (3 HSPs)
chr3 (308-405)||(25338450-25338547)
chr3 (471-516)||(25338613-25338658)
chr3 (229-287)||(25338384-25338442)
[»] chr5 (2 HSPs)
chr5 (617-703)||(31571409-31571496)
chr5 (308-405)||(31571579-31571676)
[»] chr7 (9 HSPs)
chr7 (308-404)||(26607880-26607976)
chr7 (473-647)||(26618611-26618795)
chr7 (308-405)||(26618446-26618543)
chr7 (473-598)||(26620575-26620711)
chr7 (308-399)||(26620418-26620510)
chr7 (600-647)||(26620738-26620785)
chr7 (473-536)||(26608044-26608107)
chr7 (606-647)||(26608212-26608253)
chr7 (472-516)||(8248627-8248671)
[»] chr6 (4 HSPs)
chr6 (308-404)||(24631556-24631652)
chr6 (541-589)||(24631798-24631846)
chr6 (473-511)||(30129180-30129218)
chr6 (471-516)||(1943165-1943210)
[»] scaffold0002 (3 HSPs)
scaffold0002 (331-405)||(445606-445679)
scaffold0002 (169-202)||(445422-445455)
scaffold0002 (477-532)||(445751-445806)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 122 - 405
Target Start/End: Original strand, 27150370 - 27150652
Alignment:
Q  122 gaggtgtttgattttatcatgcttttcctcttcgattggtttctatatttgatcactatttgagtagcttgtatgttctgttgtgtggtaattgtgaatc 221  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27150370 gaggtgtttgattttatcatgcttttccttttcgattggtttctatatttgatcactatttgagtagcttgtatgttctgttgtgtggtaattgtgaatc 27150469  T
Q  222 tatatgatgttttttgtgcttaggatatggtaggattggttttactctcagggaatataacaatatcagaggaattccttcctctgttcctctgttcaga 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| ||||||||| |||||||||||||||    
T  27150470 tatatgatgttttttgtgcttaggatatggtaggattggttttactctcttggaatataacaat-tcagaggaagtccttcctccgttcctctgttcaga 27150568  T
Q  322 aattaacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctcaa 405  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27150569 aattaacaacacttaaatcaataggattttgttgcttggttcatctttagtaaaggtaaattttgctccatctttatatctcaa 27150652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 471 - 705
Target Start/End: Original strand, 27150718 - 27150952
Alignment:
Q  471 gttctcacatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaaaaagccaagaagacatttgttgcattatcttgctt 570  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27150718 gttctcacatttcttttaaatacttgcagctagaagacttttgttgtttccagagaagctatgaaaaagccaagaagatatttgttgcattatcttgctt 27150817  T
Q  571 agatcccctcatggctaatttttattttgttggtcgaaaaagtgattattactaggtttatttaggatatcttatttcattgcaatgttatccaaatagt 670  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27150818 agatcccctcatggctaatttttattttgttggtggaaaaagtgattattactaggtttatttaggatatcttatttcattgcaatcttatccaaatagt 27150917  T
Q  671 tgatctaaattttgatgaaaatgtagtattttgat 705  Q
    |||||||||||||||||||||||||||||||||||    
T  27150918 tgatctaaattttgatgaaaatgtagtattttgat 27150952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 123 - 405
Target Start/End: Complemental strand, 7703419 - 7703140
Alignment:
Q  123 aggtgtttgattttatcatgcttttcctcttcgattggtttctatatttgatcactatttgagtagcttgtatgttctgttgtgtggtaattgtgaatct 222  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7703419 aggtgtttgatttgatcatgcttttccttttcgattggtttctatattttatcactatttgagtagcttgtatgttctgttgcgtggtaattgtgaatct 7703320  T
Q  223 atatgatgttttttgtgcttaggatatggtaggattggttttactctcagggaatataacaatatcagaggaattccttcctctgttcctctgttcagaa 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| ||| |||||||    
T  7703319 atatgatgttttttgtgcttaggatatggtaggattggttttactctcaggaaatataacaatatcagaggaagtccttcctctcttcttctcttcagaa 7703220  T
Q  323 attaacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctcaa 405  Q
    | ||  | || ||||||||||||||||   ||||||| |||||||||| |||||||||||| |||||||| ||||||||||||    
T  7703219 agtagaaacatttaaatcaataggatt---ttgcttgcttcatctttagtaaaggtaaattctgctccatttttatatctcaa 7703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 27150166 - 27150246
Alignment:
Q  18 caacacagttaatgcattatcaaaacttggtaatattttacaatattagagaattagatggtcaaacatgccaattgccaactat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  27150166 caacacagttaatgcattatcaaaacttggtaatattttacaatattag----ttagatggtcaaacatgccaattgccaactat 27150246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 24480077 - 24479971
Alignment:
Q  157 ttggtttctatatttgatcactatttgagtagcttgtatgttctgttgtgtggtaattgtgaatctatatgatgttttttgtgcttaggatatggtagga 256  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||     ||||||||||||||||| | ||||||||    
T  24480077 ttggtttctatatttgatcactatttaagtagcttgtatgttatgttgtgtggttattgtgattcta----ctgttttttgtgcttagggtttggtagga 24479982  T
Q  257 ttggttttact 267  Q
    ||| |||||||    
T  24479981 ttgattttact 24479971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 471 - 705
Target Start/End: Complemental strand, 7703074 - 7702827
Alignment:
Q  471 gttctcacatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaaaaa-------gccaa-gaagacatttgttgcatta 562  Q
    |||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |       || ||  ||||  ||||||||||||    
T  7703074 gttctcacgttccttctaaatacttgcagctagaagacttttgttgtttccagagaagctatgaaagatggttttgcaaacaaagatttttgttgcatta 7702975  T
Q  563 tcttgcttagatcccctcatggctaa----tttttatttt------gttggtcgaaaaagtgattattactaggtttatttaggatatcttatttcattg 652  Q
     |||| |||||| |||||||||||||    ||||||||||       ||| | |||||||||||||||||| |      |||||||||||||||| |||     
T  7702974 gcttggttagattccctcatggctaatttttttttattttttttaatttgatggaaaaagtgattattactgg------ttaggatatcttatttgatta 7702881  T
Q  653 caatgttatcc-aaatagttgatctaaattttgatgaaaatgtagtattttgat 705  Q
     |||||||||| ||||  | ||||||||||||||| ||||||||||||||||||    
T  7702880 taatgttatccaaaatcatcgatctaaattttgatcaaaatgtagtattttgat 7702827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 405
Target Start/End: Complemental strand, 24479950 - 24479853
Alignment:
Q  308 ttcctctgttcagaaattaacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctcaa 405  Q
    ||||||| |||||||| || || ||  |||||||||| ||||  |||||||| |||||||||| | ||| |||||| | || ||||||||||||||||    
T  24479950 ttcctctattcagaaagtagcaacatataaatcaatatgattaagttgcttgcttcatctttagttaagctaaattctactacatctttatatctcaa 24479853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 2e-88; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 123 - 404
Target Start/End: Original strand, 39367255 - 39367538
Alignment:
Q  123 aggtgtttgattttatcatgcttttcctcttcgattggtttctatatttgatcactatttgagtagcttgtatgttctgttgtgtggtaattgtgaatct 222  Q
    ||||||||||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39367255 aggtgtttgatttgatcatgcttttcctttttgattggtttctatatttgttcactatttgagtagcttgtatgttatgttgtgtggtaattgtgaatct 39367354  T
Q  223 atatga--tgttttttgtgcttaggatatggtaggattggttttactctcagggaatataacaatatcagaggaattccttcctct-gttcctctgttca 319  Q
    ||||||  | |||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||  |||||||| |  ||||||||||||    
T  39367355 atatgattttttttttttgcttaggatatggtaggattgattttattctcagggaatataacaatataagaggatgtccttcctttaattcctctgttca 39367454  T
Q  320 gaaattaacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctca 404  Q
    |||| || || |||||||||||||||||||||||||  || |||||||||| |||||| ||||| ||||||||| ||||||||||    
T  39367455 gaaagtagcaacacttaaatcaataggattttgttggctgcttcatctttagtaaaggaaaattctgctccatc-ttatatctca 39367538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 124 - 281
Target Start/End: Complemental strand, 12190681 - 12190526
Alignment:
Q  124 ggtgtttgattttatcatgcttttcctcttcgattggtttctatatttgatcactatttgagtagcttgtatgttctgttgtgtggtaattgtgaatcta 223  Q
    |||||||||||| |||||||||||  | ||||||||||||||||| ||||| || ||||||||| |  ||||||||| |||||||||||||||||| |||    
T  12190681 ggtgtttgatttgatcatgcttttgtt-ttcgattggtttctatacttgattacaatttgagtatc--gtatgttctattgtgtggtaattgtgaaccta 12190585  T
Q  224 tatgatgtttttt-gtgcttaggatatggtaggattggttttactctcagggaatataa 281  Q
    |||| | |||||| ||||||||||||||||||||||||||||||| || || |||||||    
T  12190584 tatgttatttttttgtgcttaggatatggtaggattggttttactttcgggaaatataa 12190526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 614 - 705
Target Start/End: Complemental strand, 18308636 - 18308544
Alignment:
Q  614 gattattactaggtttatttaggatatcttatttcattgcaatgttatcc-aaatagttgatctaaattttgatgaaaatgtagtattttgat 705  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
T  18308636 gattattactaggtttagttaggatatcttatatcattgcaatgttatccaaaatcgttgatctaaattttgatcaaaatgtagtattttgat 18308544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 478 - 668
Target Start/End: Complemental strand, 17113554 - 17113362
Alignment:
Q  478 catttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaa-----------aaagccaagaagacatttgttgcattatctt 566  Q
    |||| |||||||||||||||||||||||||||||||||| ||| |  |||||||||||            ||||||| ||||  |||||||||||| |||    
T  17113554 cattccttttaaatacttgcagctagaagatttttgttgattcaaatgaagctatgaatgatgttgttgcaagccaataagatttttgttgcattagctt 17113455  T
Q  567 gcttagatcccctcatggctaatttttattttgttggtcgaaaaagtgattattactaggtttatttaggatatcttatttcattgcaatgttatccaaa 666  Q
    ||||||||||||||| ||||| |||||      || ||||||||||||   ||||||||||||| |||||||||||||||||||||   |||||||||||    
T  17113454 gcttagatcccctcaaggctagttttt------ttagtcgaaaaagtg---attactaggtttagttaggatatcttatttcattgtcttgttatccaaa 17113364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 12190857 - 12190775
Alignment:
Q  18 caacacagttaatgcattatcaaaacttggtaatattttacaatattagagaattagatggtcaaacatgccaattgccaactat 102  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||| ||||  ||||||||||||| ||||||||||||||||||    
T  12190857 caacacagttattgcattatgaaaacttggtaaaattttacaatatcagag--ttagatggtcaaaaatgccaattgccaactat 12190775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 473 - 598
Target Start/End: Complemental strand, 18308826 - 18308690
Alignment:
Q  473 tctcacatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaa-----------aaagccaagaagacatttgttgcatt 561  Q
    |||||||||  || ||||||||||||||||||||| ||||||||| |||||||||||||||||            ||||||||||||  | |||||||||    
T  18308826 tctcacattcattctaaatacttgcagctagaagacttttgttgtatccagagaagctatgaaggatggtgttgcaagccaagaagatttctgttgcatt 18308727  T
Q  562 atcttgcttagatcccctcatggctaatttttatttt 598  Q
    | |||||||||||| ||||||||||||| ||| ||||    
T  18308726 agcttgcttagatcacctcatggctaatgtttttttt 18308690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 338 - 405
Target Start/End: Complemental strand, 18308961 - 18308894
Alignment:
Q  338 atcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctcaa 405  Q
    ||||||| ||||||| |||||| ||||||| || |||||||||||| |||||||||||||||||||||    
T  18308961 atcaatatgattttgctgcttgcttcatctctagtaaaggtaaattctgctccatctttatatctcaa 18308894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 471 - 652
Target Start/End: Original strand, 39367605 - 39367812
Alignment:
Q  471 gttctcacatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaaaaa-----------gccaagaagacatttgttgca 559  Q
    ||||||||||| ||| |||||||||| |||||||||| ||||||||||||||  ||||||||||||||           |||||| |||  |||||||||    
T  39367605 gttctcacattccttctaaatacttgtagctagaagacttttgttgtttccaaggaagctatgaaaaatggtgttgcaagccaagcagatttttgttgca 39367704  T
Q  560 ttatctt-gcttagatcccctcatggctaat-----------ttttattttg----ttggtcgaaaaagtgattattactaggtttatttaggatatctt 643  Q
    ||| ||| ||||||||||| |||||||||||           |||||||||     ||||| |||||||||||| |||||||||||| ||||||||||||    
T  39367705 ttagctttgcttagatccc-tcatggctaatgtttttttttattttattttaatttttggtggaaaaagtgattgttactaggtttagttaggatatctt 39367803  T
Q  644 atttcattg 652  Q
    |||||||||    
T  39367804 atttcattg 39367812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 39367068 - 39367099
Alignment:
Q  71 ttagatggtcaaacatgccaattgccaactat 102  Q
    ||||||||||||||||||||||||||||||||    
T  39367068 ttagatggtcaaacatgccaattgccaactat 39367099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 705
Target Start/End: Original strand, 39367810 - 39367845
Alignment:
Q  670 ttgatctaaattttgatgaaaatgtagtattttgat 705  Q
    ||||||||||||||||| ||||||||||||||||||    
T  39367810 ttgatctaaattttgatcaaaatgtagtattttgat 39367845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 6e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 169 - 405
Target Start/End: Complemental strand, 6224250 - 6224027
Alignment:
Q  169 tttgatcactatttgagtagcttgtatgttctgttgtgtggtaattgtgaatctatatgatgttttttgtgcttaggatatggtaggattggttttactc 268  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||     | ||||||||||||||| | |||||||||||||||||||     
T  6224250 tttgatcactatttgggtagcttgtatgttatgttgtgtggttattgtgattctagcgttttttttttgtgcttagggtctggtaggattggttttactt 6224151  T
Q  269 tcagggaatataacaatatcagaggaattccttcctctgttcctctgttcagaaattaacagcacttaaatcaataggattttgttgcttggttcatctt 368  Q
    ||| ||||||||||||| |  ||            ||| |||||||||||| ||| || || |||||||||||||| |||||||||||||| ||||||||    
T  6224150 tcatggaatataacaatgtggga------------tct-ttcctctgttcaaaaagtagcaacacttaaatcaatatgattttgttgcttgcttcatctt 6224064  T
Q  369 taataaaggtaaattttgctccatctttatatctcaa 405  Q
    || |||||||||||| |||||||||||||||||||||    
T  6224063 tagtaaaggtaaattctgctccatctttatatctcaa 6224027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 492 - 702
Target Start/End: Complemental strand, 14998228 - 14998013
Alignment:
Q  492 acttgcagctagaagatttttgttgtttccagagaagctatgaaa----aagccaagaagacatttgttgcattatcttgcttagatcccctcatggcta 587  Q
    |||||||||||||||| ||||| |||||||| |||| |||||       || |||||||||  |||||||||||| ||||||||||   | |||||||||    
T  14998228 acttgcagctagaagacttttgctgtttccaaagaaactatggtgttgcaaaccaagaagatttttgttgcattagcttgcttagaagacttcatggcta 14998129  T
Q  588 atttttattttgttggtcgaaaaagtgattattactaggtttatttaggatatcttatttcattgcaatgttatcc-aaatagttgatctaaattttgat 686  Q
    |||||  |||  ||  | ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||    
T  14998128 attttattttattttttggaaaaagtgattattactaggtttagttaggatatcttatttcattgtaatgttatccaaaatcgttgatctaaattttgat 14998029  T
Q  687 gaaaatgtagtatttt 702  Q
     |||||||||||||||    
T  14998028 caaaatgtagtatttt 14998013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 600 - 666
Target Start/End: Complemental strand, 6223863 - 6223797
Alignment:
Q  600 ttggtcgaaaaagtgattattactaggtttatttaggatatcttatttcattgcaatgttatccaaa 666  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||| |||||||    
T  6223863 ttggtagaaaaagtgattattactgggtttagttaggatatcttatttcattgtaatgtcatccaaa 6223797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 536
Target Start/End: Complemental strand, 6223945 - 6223896
Alignment:
Q  487 taaatacttgcagctagaagatttttgttgtttccagagaagctatgaaa 536  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  6223945 taaatacttgcagctagaagacttttgttgtttcgagagaagctatgaaa 6223896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 536
Target Start/End: Original strand, 17633932 - 17633997
Alignment:
Q  471 gttctcacatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaaa 536  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||| ||| || |||| |||||||    
T  17633932 gttctcacattccttctaaatacttgcagctagaagatttttgttgcttcaagtgaagttatgaaa 17633997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 209 - 405
Target Start/End: Original strand, 24558247 - 24558437
Alignment:
Q  209 gtaattgtgaatctatatgatgttttttgtgcttaggatatggtaggattggttttactctcagggaatataacaatatcagaggaattccttcctctgt 308  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||         |    
T  24558247 gtaattgtgaatctatattctgtttattgtgcttaggatatggtaggattggctatactttcagggaatataacaatatcagaggaagtc--------at 24558338  T
Q  309 tcctctgttcagaaattaacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaat--tttgctccatctttatatctcaa 405  Q
     ||||| |||||||| || || ||||||||| ||||||||||||||||||| |||| ||||| |||||||||||  | |||||||||||||||||||||    
T  24558339 gcctctattcagaaagtagcaacacttaaattaataggattttgttgcttgcttcacctttagtaaaggtaaattatatgctccatctttatatctcaa 24558437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 471 - 680
Target Start/End: Original strand, 37750460 - 37750682
Alignment:
Q  471 gttctcacatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaaa-----------aagccaagaagacatttgttgca 559  Q
    ||||||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||           ||||||||||||  |||||||||    
T  37750460 gttctcacattccttctaaatacttgcaactagaagacttttgttgtttccagagaagctatgaaagatggtgttacaagccaagaagatttttgttgca 37750559  T
Q  560 ttatcttgcttagatcccctcatggctaatttttattttgttggtcgaaaaagtgattattactaggtttatttaggatatcttatttc--attgcaatg 657  Q
    ||| |||||||||| ||| ||||||||||| ||| |||| ||| | |||||| |||||||||||||||||| |||||||||||||||||   ||| ||||    
T  37750560 ttagcttgcttagaccccatcatggctaatgtttttttt-ttgttggaaaaaatgattattactaggtttagttaggatatcttatttcgatttgtaatg 37750658  T
Q  658 ttatcc-aaatagttgatctaaat 680  Q
    |||||| |||| ||||||||||||    
T  37750659 ttatccaaaatcgttgatctaaat 37750682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 126 - 405
Target Start/End: Original strand, 37744223 - 37744485
Alignment:
Q  126 tgtttgattttatcatgcttttcctcttcgattggtttctatatttgatcactatttgagtagcttgtatgttctgttgtgtggtaattgtgaatctata 225  Q
    |||||||||| |||||||||||||| ||    |||||||||||||||||||  ||||| |||||||||||| ||||||||||||| ||||||| ||||      
T  37744223 tgtttgatttgatcatgcttttcctttttagctggtttctatatttgatcataatttgtgtagcttgtatggtctgttgtgtggttattgtgattcta-- 37744320  T
Q  226 tgatgttttttgtgcttaggatatggtaggattggttttactctcagggaatataacaatatcagaggaattccttcctctgttcctctgttcagaaatt 325  Q
     | ||||||||  |||| ||   ||||||||||| ||||||| ||| ||||||||||||| | |||         ||||    |||||| |||||||| |    
T  37744321 -gctgttttttc-gcttggggcctggtaggattgattttactttcatggaatataacaatgtgaga---------tcct----tcctctcttcagaaagt 37744405  T
Q  326 aacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctcaa 405  Q
    | || ||||||||||||| |||||||||| |||| |||||||||| |||||||||||| ||| |||||||| ||||||||    
T  37744406 agcaacacttaaatcaattggattttgtttcttgcttcatctttagtaaaggtaaattctgcaccatctttgtatctcaa 37744485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 471 - 686
Target Start/End: Original strand, 37744552 - 37744793
Alignment:
Q  471 gttctcacatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaaa-----------aagccaagaagacatttgttgca 559  Q
    ||||||||||| ||| |||||||||||| |||||||| |||||||||||| |||||||||||||||            | |||| ||||  |||||||||    
T  37744552 gttctcacattccttctaaatacttgcacctagaagacttttgttgtttcaagagaagctatgaaagatggtgttgcgatccaaaaagatttttgttgca 37744651  T
Q  560 ttatcttgcttagatcccctcatggctaa---tttttattt---------tgttggtcgaaaaagtgattattactaggtttatttaggatatcttattt 647  Q
    ||| |||||||||||||||||||||||||   |||||||||         | ||||| ||||||||||||||||||||||||| || |||||||||||||    
T  37744652 ttagcttgcttagatcccctcatggctaatgttttttattttattttaaattttggtggaaaaagtgattattactaggtttagttgggatatcttattt 37744751  T
Q  648 c--attgcaatgttatcc-aaatagttgatctaaattttgat 686  Q
    |   ||| |||||||||| |||| |||||||||||| |||||    
T  37744752 cgatttgtaatgttatccaaaatcgttgatctaaatcttgat 37744793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 21318774 - 21318656
Alignment:
Q  143 cttttcctcttcgattggtttctatatttgatcactatttgagtagcttgtatgttctgttgtgtggtaattgtgaatctatatgatgttttttgtgctt 242  Q
    |||||||| || | ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||  ||     |||||| |||    
T  21318774 cttttcctttttggttgatttttatatttgatcactatttgagtagcttgtatgttctgttgtatggttattgtgattctagctg----cttttgtactt 21318679  T
Q  243 aggatatggtaggattggtttta 265  Q
    ||||| |||||||||||||||||    
T  21318678 aggatttggtaggattggtttta 21318656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 24557960 - 24558040
Alignment:
Q  18 caacacagttaatgcattatcaaaacttggtaatattttacaatattagagaattagatggtcaaacatgccaattgccaactat 102  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||    |||| |||||||||||||||||| |||||||||||||    
T  24557960 caacacagataatgcattatcaaaacttggtaaaatttttcaat----gagagttagatggtcaaacatgctaattgccaactat 24558040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 37750335 - 37750394
Alignment:
Q  346 gattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctcaa 405  Q
    ||||| ||| |||| |||||||||| |||||||||||| |||||||||||||||||||||    
T  37750335 gatttagttacttgcttcatctttactaaaggtaaattctgctccatctttatatctcaa 37750394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 25338450 - 25338547
Alignment:
Q  308 ttcctctgttcagaaattaacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctcaa 405  Q
    |||||||||| ||||| || || ||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |||||||||||||||||||    
T  25338450 ttcctctgtttagaaagtagcaacacttaaatcaataggattttgttgcttgcttcatctttagtaaaggtaaattctactccatctttatatctcaa 25338547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 471 - 516
Target Start/End: Original strand, 25338613 - 25338658
Alignment:
Q  471 gttctcacatttcttttaaatacttgcagctagaagatttttgttg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  25338613 gttctcacatttcttttaaatacttgcagctagaagatttttgttg 25338658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 25338384 - 25338442
Alignment:
Q  229 tgttttttgtgcttaggatatggtaggattggttttactctcagggaatataacaatat 287  Q
    ||||||||||||||| | | |||||| ||| |||||||| ||| |||||||||||||||    
T  25338384 tgttttttgtgcttacggtctggtagaattcgttttactttcatggaatataacaatat 25338442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 617 - 703
Target Start/End: Complemental strand, 31571496 - 31571409
Alignment:
Q  617 tattactaggtttatttaggatatcttatttcattgcaatgttatcc-aaatagttgatctaaattttgatgaaaatgtagtattttg 703  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||||||||    
T  31571496 tattactaggtttagttaggatatcttatttcattgtaatgttatccaaaatagttgatctaaattttgatcaaaaagtagtattttg 31571409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 308 - 405
Target Start/End: Complemental strand, 31571676 - 31571579
Alignment:
Q  308 ttcctctgttcagaaattaacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctcaa 405  Q
    |||||||||||||||| |  || ||||||||||||||||||||||||| ||| |||||||||| ||||||||| || | || ||||||||||||||||    
T  31571676 ttcctctgttcagaaagtggcaacacttaaatcaataggattttgttgtttgattcatctttagtaaaggtaagttcttctgcatctttatatctcaa 31571579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 308 - 404
Target Start/End: Original strand, 26607880 - 26607976
Alignment:
Q  308 ttcctctgttcagaaattaacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctca 404  Q
    ||||||||||| | || || || ||||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||| ||||||||||||||    
T  26607880 ttcctctgttctggaagtagcaacacttaaatcaataggattttgttgcttgcttcatctttagtagaggtaaattctgctctatctttatatctca 26607976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 473 - 647
Target Start/End: Original strand, 26618611 - 26618795
Alignment:
Q  473 tctcacatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaaa-----------aagccaagaagacatttgttgcatt 561  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||||| || ||| ||||||||           |||||||||| |  ||| |||||||    
T  26618611 tctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaactatgaaagatggtgttgcaagccaagaatatttttcttgcatt 26618710  T
Q  562 atcttgcttagatcccctcatggctaatttttattttgttggtcgaaaaagtgattattactaggtttatttaggatatcttattt 647  Q
    | ||||||||||| ||||||||| || || ||||||| ||||| ||||||||||||||| ||||||||    ||||||||||||||    
T  26618711 agcttgcttagattccctcatggttatttattatttt-ttggtggaaaaagtgattattgctaggtttggcgaggatatcttattt 26618795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 26618446 - 26618543
Alignment:
Q  308 ttcctctgttcagaaattaacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctcaa 405  Q
    |||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||| ||  | |||||| || ||||| |||||||||||||||    
T  26618446 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgcttgcttcatctctagcagaggtaagttatgctctatctttatatctcaa 26618543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 473 - 598
Target Start/End: Original strand, 26620575 - 26620711
Alignment:
Q  473 tctcacatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaaa-----------aagccaagaagacatttgttgcatt 561  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||||| |  ||||||||||||           ||||||||||||  |||||||||||    
T  26620575 tctcacattccttctaaatacttgcagctagaagacttttgttgtttcaaatgaagctatgaaagatgatgttgcaagccaagaagatttttgttgcatt 26620674  T
Q  562 atcttgcttagatcccctcatggctaatttttatttt 598  Q
    | ||| |||||||||||||||||||||| ||| ||||    
T  26620675 agctttcttagatcccctcatggctaatgtttttttt 26620711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 26620418 - 26620510
Alignment:
Q  308 ttcctctgttcagaaattaacagcacttaaatcaataggattttgttgcttggttc-atctttaataaaggtaaattttgctccatctttata 399  Q
    |||||||||||| ||| || || ||||||||||||||||||||||||||||| ||| ||||||| || ||||||||| ||||  |||||||||    
T  26620418 ttcctctgttcataaagtagcaacacttaaatcaataggattttgttgcttgtttcaatctttagtagaggtaaattatgctttatctttata 26620510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 600 - 647
Target Start/End: Original strand, 26620738 - 26620785
Alignment:
Q  600 ttggtcgaaaaagtgattattactaggtttatttaggatatcttattt 647  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  26620738 ttggtggaaaaagtgattattactaggtttagttaggatatcttattt 26620785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 473 - 536
Target Start/End: Original strand, 26608044 - 26608107
Alignment:
Q  473 tctcacatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctatgaaa 536  Q
    ||||||||| ||| || |||||||||||||||||| |||||||||||| |  ||||||||||||    
T  26608044 tctcacattccttctacatacttgcagctagaagacttttgttgtttcaaatgaagctatgaaa 26608107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 647
Target Start/End: Original strand, 26608212 - 26608253
Alignment:
Q  606 gaaaaagtgattattactaggtttatttaggatatcttattt 647  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  26608212 gaaaaaatgattattactaggtttagttaggatatcttattt 26608253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 516
Target Start/End: Complemental strand, 8248671 - 8248627
Alignment:
Q  472 ttctcacatttcttttaaatacttgcagctagaagatttttgttg 516  Q
    |||||||||| ||| |||||||||||||||||||||| |||||||    
T  8248671 ttctcacattacttctaaatacttgcagctagaagatatttgttg 8248627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 308 - 404
Target Start/End: Original strand, 24631556 - 24631652
Alignment:
Q  308 ttcctctgttcagaaattaacagcacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctca 404  Q
    ||||||| |||||||| |  || ||||| |||||||||||||||||| |||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  24631556 ttcctcttttcagaaagttgcaacacttgaatcaataggattttgttccttgcttcatctttagtaaaggtaaattctgctccatctttatatctca 24631652  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 541 - 589
Target Start/End: Original strand, 24631798 - 24631846
Alignment:
Q  541 caagaagacatttgttgcattatcttgcttagatcccctcatggctaat 589  Q
    ||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  24631798 caagaagatttttgttgcattagcttgcttagatcccctcatggctaat 24631846  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 30129180 - 30129218
Alignment:
Q  473 tctcacatttcttttaaatacttgcagctagaagatttt 511  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  30129180 tctcacattccttctaaatacttgcagctagaagatttt 30129218  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 1943210 - 1943165
Alignment:
Q  471 gttctcacatttcttttaaatacttgcagctagaagatttttgttg 516  Q
    ||||||||||| ||| ||||||||||| |||||||||| |||||||    
T  1943210 gttctcacattccttctaaatacttgcggctagaagatatttgttg 1943165  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 405
Target Start/End: Original strand, 445606 - 445679
Alignment:
Q  331 cacttaaatcaataggattttgttgcttggttcatctttaataaaggtaaattttgctccatctttatatctcaa 405  Q
    |||||||||||||| |||||||||| ||| || ||||||| |||| |||||||||||||||| ||||||| ||||    
T  445606 cacttaaatcaataagattttgttgtttgctttatctttagtaaaagtaaattttgctccat-tttatatttcaa 445679  T

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Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 445422 - 445455
Alignment:
Q  169 tttgatcactatttgagtagcttgtatgttctgt 202  Q
    ||||||||||||||||||||||||||||||||||    
T  445422 tttgatcactatttgagtagcttgtatgttctgt 445455  T

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Target: scaffold0002; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 532
Target Start/End: Original strand, 445751 - 445806
Alignment:
Q  477 acatttcttttaaatacttgcagctagaagatttttgttgtttccagagaagctat 532  Q
    ||||| ||| ||||||||||||||||||||||| |||||| ||| || ||||||||    
T  445751 acattccttctaaatacttgcagctagaagattgttgttgcttcaagtgaagctat 445806  T

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