View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_low_10 (Length: 381)
Name: NF1482_low_10
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 21 - 364
Target Start/End: Complemental strand, 43142146 - 43141802
Alignment:
| Q |
21 |
attattgttagcccttgtgctgcctgcaagattctccgtcgcaggtgtgttgaaaagtgtgtgttagctccgtattttcctccaactgatccactcaagt |
120 |
Q |
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| T |
43142146 |
attattgttagcccttgtgctgcctgcaagattctccgtcgcaggtgcgttgaaaagtgtgtgttagctccgtattttcctccaactgatccactcaagt |
43142047 |
T |
|
| Q |
121 |
tcaccattgctcatagagtctttggagctagcaacatcattaagttcttgcaggtaacatacattcataattcaccaacaa-aaaagtcatcatgttaca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
43142046 |
tcaccattgctcatagagtctttggagctagcaacatcattaagttcttgcaggtaacatacattcataattcaccaacaaaaaaaatcatcatgttaca |
43141947 |
T |
|
| Q |
220 |
aaccaatttgcacattactaaaatatatatttttcaacatattggacatttatatttatgattttaaaacaaattcttgcgattctattgttgttgcctt |
319 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43141946 |
aaccaatttgcacattactaaaatatatttttttcaacatattggacatttatatttatgattttaaaacaaattcttgcgattctattgttgttgcctt |
43141847 |
T |
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| Q |
320 |
gtttgtgactatgaccagtttattcacaccttcaaggcatgacat |
364 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43141846 |
gtttatgactatgaccagtttattcacaccttcaaggcatgacat |
43141802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 35958646 - 35958687
Alignment:
| Q |
116 |
caagttcaccattgctcatagagtctttggagctagcaacat |
157 |
Q |
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| T |
35958646 |
caagtttaccattgctcatagagtttttggtgctagcaacat |
35958687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 22428092 - 22428009
Alignment:
| Q |
93 |
tattttcctccaactgatccactcaagttcaccattgctcatagagtctttggagctagcaacatcattaagttcttgcaggta |
176 |
Q |
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||||||||||| ||||| || |||||| ||||||||||||||||| ||||| |||||||||||||| || ||||| |||||| |
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| T |
22428092 |
tattttcctcctactgaccctgccaagtttaccattgctcatagagtttttggtgctagcaacatcatcaaattcttacaggta |
22428009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 28057640 - 28057599
Alignment:
| Q |
116 |
caagttcaccattgctcatagagtctttggagctagcaacat |
157 |
Q |
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|||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
28057640 |
caagtttaccattgctcatagagtttttggtgctagcaacat |
28057599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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