View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1482_low_19 (Length: 272)

Name: NF1482_low_19
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1482_low_19
NF1482_low_19
[»] chr5 (3 HSPs)
chr5 (1-251)||(5495667-5495913)
chr5 (7-138)||(13906020-13906151)
chr5 (19-139)||(2552372-2552492)
[»] chr4 (7 HSPs)
chr4 (7-234)||(51997038-51997265)
chr4 (7-251)||(51676649-51676892)
chr4 (45-139)||(40946306-40946400)
chr4 (9-56)||(5834167-5834214)
chr4 (47-167)||(55970061-55970183)
chr4 (126-234)||(5834026-5834135)
chr4 (124-167)||(8757300-8757343)
[»] chr7 (8 HSPs)
chr7 (7-234)||(5532820-5533043)
chr7 (1-155)||(36655601-36655754)
chr7 (18-109)||(22074220-22074311)
chr7 (126-233)||(38223836-38223943)
chr7 (146-236)||(47841578-47841668)
chr7 (103-163)||(17000688-17000748)
chr7 (24-105)||(30224284-30224367)
chr7 (174-234)||(33987596-33987656)
[»] chr2 (6 HSPs)
chr2 (24-234)||(7772870-7773080)
chr2 (18-178)||(4062644-4062803)
chr2 (45-158)||(43302183-43302296)
chr2 (19-133)||(448881-448995)
chr2 (125-163)||(9707430-9707468)
chr2 (125-173)||(16118068-16118116)
[»] chr8 (3 HSPs)
chr8 (49-234)||(30905618-30905803)
chr8 (19-158)||(44104062-44104200)
chr8 (24-139)||(24845697-24845814)
[»] chr3 (1 HSPs)
chr3 (25-155)||(52120060-52120189)
[»] chr6 (1 HSPs)
chr6 (45-158)||(378847-378960)
[»] chr1 (1 HSPs)
chr1 (80-172)||(42400918-42401012)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 5495667 - 5495913
Alignment:
Q  1 aaaatatctaaataggacccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagta 100  Q
    |||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| ||| | ||||||||||||||||||||||| ||||||||    
T  5495667 aaaagatctaaataggacccaccaataacattaaaaaacaaaggtaaattgcaattgaaaaacaatagtacaatgacattgattattttaaacaaaagta 5495766  T
Q  101 acgtggggttcacttaaacattaaggtcttaagtgagactctggatcttagaagacccccaaaaaatttctctacaatcgaggtacgtattagatatctg 200  Q
    | ||||| | ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| || | |    
T  5495767 atgtgggatccacttaagcattaaggtcttaattgagactctgggtcttagaagacccccaaaaaatttctcaacaatcgaggtacgtattaggtaccgg 5495866  T
Q  201 atcttaaataattaagacactaccattgtggatgatcttactggtcttttt 251  Q
     |||||||    |||||| ||| |||||||||||||||||| |||||||||    
T  5495867 gtcttaaa----taagaccctatcattgtggatgatcttaccggtcttttt 5495913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 13906020 - 13906151
Alignment:
Q  7 tctaaataggacccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtgg 106  Q
    |||||||||||||||||| ||| ||||||||| |||| |||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||| ||||    
T  13906020 tctaaataggacccaccagtaaaattaaaaaatcaaggtaaattgcaattgaaaaacaatagtacaatgacattgattattttaagcaaaagtaatgtgg 13906119  T
Q  107 ggttcacttaaacattaaggtcttaagtgaga 138  Q
    ||| ||||||| |||| |||||||||||||||    
T  13906120 ggtccacttaagcattgaggtcttaagtgaga 13906151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 2552492 - 2552372
Alignment:
Q  19 ccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaaa 118  Q
    |||||||||||||||||||| |||| |||||||  ||| | || ||| | |||||| ||| |||||||||||| |||||||||  |||||||||||| ||    
T  2552492 ccaccaataacattaaaaaatcaaggtaaattgtcattgataaacaatagtacaatcacaatgattattttaaacaaaagtaatttggggttcactttaa 2552393  T
Q  119 cattaaggtcttaagtgagac 139  Q
    |||| || |||||| ||||||    
T  2552392 cattgagatcttaaatgagac 2552372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 51997265 - 51997038
Alignment:
Q  7 tctaaataggacccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtgg 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  51997265 tctaaataggacccaccaataacattaaaaaaccaaggtaaattgcaattgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtgg 51997166  T
Q  107 ggttcacttaaacattaaggtcttaagtgagactctggatcttagaagacccccaaaaaatttctctacaatcgaggtacgtattagatatctgatctta 206  Q
    ||  ||||||| |||| ||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||| | | ||| |||||| |||  |||||||    
T  51997165 ggcccacttaagcattgaggtcttaagtgagaccttgggtcttagaagacccccaaaaaatttctccacaatagggatacctattaggtattggatctta 51997066  T
Q  207 aataattaagacactaccattgtggatg 234  Q
    |||| ||||||| |||||||||||||||    
T  51997065 aatagttaagaccctaccattgtggatg 51997038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 51676892 - 51676649
Alignment:
Q  7 tctaaataggacccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtgg 106  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  51676892 tctaaataagacccaccaataa-attaaaaaaccaaggtaaattgcaattgaaaagcaataatacaatgacattgattattttaagcgaaagtaatgtgg 51676794  T
Q  107 ggttcacttaaacattaaggtcttaagtgagactctggatcttagaagacccccaaaaaatttctctacaatcgaggtacgtattagatatctgatctta 206  Q
    ||  ||||||| |||| ||||||||| | ||||||||| ||||||||||||| ||||||||||||| ||||| | ||||| |||||  || | |||||||    
T  51676793 ggcccacttaagcattgaggtcttaactaagactctgggtcttagaagacccgcaaaaaatttctccacaataggggtacctattaagtaccggatctta 51676694  T
Q  207 aataattaagacactaccattgtggatgatcttactggtcttttt 251  Q
    |||| |||| || |||| |||||||||| ||| | ||||| ||||    
T  51676693 aatagttaaaaccctactattgtggatggtctaattggtcctttt 51676649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 40946306 - 40946400
Alignment:
Q  45 taaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaaacattaaggtcttaagtgagac 139  Q
    |||||||||||| ||||||||   || ||||||| | ||||||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||    
T  40946306 taaattgcaattgaaaagcaattgtagaatgacaattattattttaagaaaaagtaatgtggggtccacttaagcattgaggtcttaagtgagac 40946400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 5834214 - 5834167
Alignment:
Q  9 taaataggacccaccaataacattaaaaaaccaagataaattgcaatt 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5834214 taaataggacccaccaataacattaaaaaaccaaggtaaattgcaatt 5834167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 55970183 - 55970061
Alignment:
Q  47 aattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaa--cgtggggttcacttaaacattaaggtcttaagtgagactctgg 144  Q
    |||||||||| |||| ||| | |||||||||| ||||||||||||| ||| ||||  || ||||| |||||||||||| || ||||||||||||  || |    
T  55970183 aattgcaattgaaaaacaatagtacaatgacaatgattattttaagaaaatgtaatgcgcggggtccacttaaacattgagttcttaagtgagatcctag 55970084  T
Q  145 atcttagaagacccccaaaaaat 167  Q
     || ||||||||||  |||||||    
T  55970083 gtcatagaagaccctaaaaaaat 55970061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 5834135 - 5834026
Alignment:
Q  126 gtcttaagtgaga-ctctggatcttagaagacccccaaaaaatttctctacaatcgaggtacgtattagatatctgatcttaaataattaagacactacc 224  Q
    ||||||||||||  || ||| |||| ||||| ||| |||||||||||| ||||| ||||||| |||||| || | | ||||||||| |||| || |||||    
T  5834135 gtcttaagtgagtgctttgggtcttggaagatccctaaaaaatttctccacaatggaggtacctattaggtaccgggtcttaaatagttaaaaccctacc 5834036  T
Q  225 attgtggatg 234  Q
    ||||||||||    
T  5834035 attgtggatg 5834026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 8757343 - 8757300
Alignment:
Q  124 aggtcttaagtgagactctggatcttagaagacccccaaaaaat 167  Q
    |||||||||||||||||||||||||||  ||| |||||||||||    
T  8757343 aggtcttaagtgagactctggatcttaagagatccccaaaaaat 8757300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 5532820 - 5533043
Alignment:
Q  7 tctaaataggacccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtgg 106  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  5532820 tctaaataggacccaccaataacattaaaaaatcaaggtaaattgcaattgaaaagcaatagtacaatgacattgattattttaagcaaaagtaatgtgg 5532919  T
Q  107 ggttcacttaaacattaaggtcttaagtgagactctggatcttagaagacccccaaaaaatttctctacaatcgaggtacgtattagatatctgatctta 206  Q
     || ||||||| |||| | |||||||||||||| |    |||||||||||| |||||||| || || ||||| ||||||| ||||||||| | |||||||    
T  5532920 agtccacttaagcattgatgtcttaagtgagaccc----tcttagaagacctccaaaaaaattatccacaatggaggtacctattagataccggatctta 5533015  T
Q  207 aataattaagacactaccattgtggatg 234  Q
    |||||||||||| |||||||||| ||||    
T  5533016 aataattaagactctaccattgtagatg 5533043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 36655754 - 36655601
Alignment:
Q  1 aaaatatctaaataggacccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagta 100  Q
    ||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||| | ||||||||||||||||||||||| ||||||||    
T  36655754 aaaatgtctaaataggacccaccaataacattaaaaaatcaaggtaaattacaattgaaaagcaatagtacaatgacattgattattttaatcaaaagta 36655655  T
Q  101 acgtggggttcacttaaacattaaggtcttaagtgagactctggatcttagaaga 155  Q
    | ||||  | ||||||| || | ||||||||||||||||||||||||||| ||||    
T  36655654 atgtggaatccacttaagca-tgaggtcttaagtgagactctggatcttaaaaga 36655601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 22074311 - 22074220
Alignment:
Q  18 cccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggt 109  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||    
T  22074311 cccaccaataacattaaaaagccaaggtaaattgcaattaaaaagcaatagtacaatgacaatgattattttaagcaaaagtaatgtggggt 22074220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 38223943 - 38223836
Alignment:
Q  126 gtcttaagtgagactctggatcttagaagacccccaaaaaatttctctacaatcgaggtacgtattagatatctgatcttaaataattaagacactacca 225  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||| || |||||  | ||||  ||||| || | ||||||||||| ||||||| | ||||    
T  38223943 gtcttaagtgagactctgggtcttataagacccccaaaaattttgtccacaatgaaagtaccaattaggtaccagatcttaaatagttaagaccccacca 38223844  T
Q  226 ttgtggat 233  Q
    ||||||||    
T  38223843 ttgtggat 38223836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 47841578 - 47841668
Alignment:
Q  146 tcttagaagacccccaaaaaatttctctacaatcgaggtacgtattagatatctgatcttaaataattaagacactaccattgtggatgat 236  Q
    ||||| |||||||| |||||||||||| ||||| | | ||| ||||||||| | ||||||||||| |||||||  ||||||||||||||||    
T  47841578 tcttataagacccctaaaaaatttctccacaatggggctacctattagataccggatcttaaatagttaagaccgtaccattgtggatgat 47841668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 17000688 - 17000748
Alignment:
Q  103 gtggggttcacttaaacattaaggtcttaagtgagactctggatcttagaagacccccaaa 163  Q
    |||||| ||||| ||| || | |||||||||| ||||||||||||||||||||||||||||    
T  17000688 gtggggatcactaaaagatgagggtcttaagttagactctggatcttagaagacccccaaa 17000748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 30224367 - 30224284
Alignment:
Q  24 aataacattaaaaaa--ccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtg 105  Q
    |||||||||||||||  ||||| ||||||  |||| |||||||| |||||||| | | ||||||||||||| ||||||||||||    
T  30224367 aataacattaaaaaaagccaaggtaaattataattgaaaagcaataatacaataaaaatgattattttaagaaaaagtaacgtg 30224284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 33987656 - 33987596
Alignment:
Q  174 acaatcgaggtacgtattagatatctgatcttaaataattaagacactaccattgtggatg 234  Q
    ||||| ||||||||||||||||| | ||||||||||  |||||||  | ||||||||||||    
T  33987656 acaatggaggtacgtattagataccagatcttaaatgtttaagactattccattgtggatg 33987596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 7772870 - 7773080
Alignment:
Q  24 aataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaaacatta 123  Q
    ||||||||||||||||||||||||||| ||||| |||| ||| | ||||||  ||||||||||||||||||||||||| ||||||| | ||||| ||||     
T  7772870 aataacattaaaaaaccaagataaattacaattgaaaaacaatagtacaatatcattgattattttaagcaaaagtaatgtggggtccgcttaagcattg 7772969  T
Q  124 aggtcttaagtgagactctggatcttagaagacccccaaaaaatttctctacaatcgaggtacgtattagatatctgatcttaaataattaagacactac 223  Q
    ||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||  |  ||| ||||||||||| ||||||||||| ||||||   |||    
T  7772970 aggtcttaaatgagaccctggatctttgaagaccccaaaaaaatttctctacaataaaaatacctattagatatcagatcttaaatagttaagatcatac 7773069  T
Q  224 cattgtggatg 234  Q
    |||||| ||||    
T  7773070 cattgttgatg 7773080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 4062644 - 4062803
Alignment:
Q  18 cccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaa 117  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| ||| | ||||||||||||||||||| ||||| | | ||| ||||||| |||||||    
T  4062644 cccaccaataacattaaaaaatcaagataaattgcaattgaaaaacaata-tacaatgacattgattattctaagcgagaataatgtggggtccacttaa 4062742  T
Q  118 acattaaggtcttaagtgagactctggatcttagaagacccccaaaaaatttctctacaat 178  Q
      ||| | |||||||||||||  | || |||||||||||||| ||||||||||||||||||    
T  4062743 gtattgaagtcttaagtgagatcccgggtcttagaagacccctaaaaaatttctctacaat 4062803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 43302296 - 43302183
Alignment:
Q  45 taaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaaacattaaggtcttaagtgagactctgg 144  Q
    |||||||||||| |||| ||| | | |||||||| ||||||||||||| |||||||| ||||||| |||||||||||  | |||||||||||||||||||    
T  43302296 taaattgcaattgaaaaacaatagtccaatgacaatgattattttaagaaaaagtaatgtggggtccacttaaacatcgatgtcttaagtgagactctgg 43302197  T
Q  145 atcttagaagaccc 158  Q
     |||||||||||||    
T  43302196 gtcttagaagaccc 43302183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 448881 - 448995
Alignment:
Q  19 ccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaaa 118  Q
    |||||||||||||||||||  |||  |||||| ||||| |||||||||  |||||||||| ||||||||||||  |||||||| ||| ||| ||||||||    
T  448881 ccaccaataacattaaaaagtcaaagtaaatttcaattgaaaagcaacggtacaatgacaatgattattttaattaaaagtaatgtgaggtccacttaaa 448980  T
Q  119 cattaaggtcttaag 133  Q
    |||| ||||||||||    
T  448981 cattgaggtcttaag 448995  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 9707430 - 9707468
Alignment:
Q  125 ggtcttaagtgagactctggatcttagaagacccccaaa 163  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  9707430 ggtcttaagttagaccctggatcttagaagacccccaaa 9707468  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 16118068 - 16118116
Alignment:
Q  125 ggtcttaagtgagactctggatcttagaagacccccaaaaaatttctct 173  Q
    ||||||||||||||| || | ||||| |||||| |||||||||||||||    
T  16118068 ggtcttaagtgagacactaggtcttataagacctccaaaaaatttctct 16118116  T

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Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 30905618 - 30905803
Alignment:
Q  49 ttgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaaacattaaggtcttaagtgagactctggatct 148  Q
    |||||||| |||| ||| | ||||||||||||||| ||||||||||||||||| ||| ||| ||||||| |||| ||||||||||||||||  ||| |||    
T  30905618 ttgcaattgaaaaacaatagtacaatgacattgatcattttaagcaaaagtaatgtgaggtccacttaagcattgaggtcttaagtgagacattgggtct 30905717  T
Q  149 tagaagacccccaaaaaatttctctacaatcgaggtacgtattagatatctgatcttaaataattaagacactaccattgtggatg 234  Q
    || |||||| |||||||||||||  ||||| | ||||| |||||| |||| | ||||||||| ||||||| |||||||| ||||||    
T  30905718 taaaagacctccaaaaaatttcttcacaatgggggtacctattaggtatcagctcttaaatagttaagaccctaccattatggatg 30905803  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 44104200 - 44104062
Alignment:
Q  19 ccaccaataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaaa 118  Q
    |||| ||||||||||||||  || | |||||||||||| |||| ||| | || ||||||||| |||||||||| ||||||||| ||||||| |||||||     
T  44104200 ccacaaataacattaaaaagtcagg-taaattgcaattgaaaaacaatagtagaatgacattaattattttaaacaaaagtaatgtggggtccacttaag 44104102  T
Q  119 cattaaggtcttaagtgagactctggatcttagaagaccc 158  Q
    |||| ||||||||||||||||| ||| || ||||||||||    
T  44104101 cattgaggtcttaagtgagactatgggtcctagaagaccc 44104062  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 24845814 - 24845697
Alignment:
Q  24 aataacattaaaaaac--caagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaaacat 121  Q
    |||||||||||||||   |||| |||||| ||||| |||| ||| | |||||| | | ||||||||||||| |||||||| || |||| || |||| |||    
T  24845814 aataacattaaaaaaagtcaaggtaaattacaattgaaaaacaatagtacaataaaaatgattattttaagaaaaagtaatgtagggtccatttaagcat 24845715  T
Q  122 taaggtcttaagtgagac 139  Q
    | ||||||||||||||||    
T  24845714 tgaggtcttaagtgagac 24845697  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 52120060 - 52120189
Alignment:
Q  25 ataacattaaaaaaccaagataaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaaacattaa 124  Q
    |||||||||| || | ||| |||||||||||  |||||||| | |||||||||| | ||||||||| ||||||||||   ||||| |||||||||||| |    
T  52120060 ataacattaagaagcaaaggtaaattgcaatagaaaagcaatagtacaatgacaattattattttaggcaaaagtaatacggggtccacttaaacattga 52120159  T
Q  125 ggtcttaagtgagactctggatcttagaaga 155  Q
    ||||||||||||||| |||| ||||||||||    
T  52120160 ggtcttaagtgagac-ctgggtcttagaaga 52120189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 378960 - 378847
Alignment:
Q  45 taaattgcaattaaaaagcaacaatacaatgacattgattattttaagcaaaagtaacgtggggttcacttaaacattaaggtcttaagtgagactctgg 144  Q
    |||||||||||| |||| ||| |||||||||||| |||| |||||||| |||||||| ||| ||| ||||||| |||| |||| ||||||||||| || |    
T  378960 taaattgcaattgaaaaacaataatacaatgacaatgatcattttaagaaaaagtaatgtgtggtccacttaagcattgaggttttaagtgagaccctag 378861  T
Q  145 atcttagaagaccc 158  Q
     |||||||||||||    
T  378860 gtcttagaagaccc 378847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 42401012 - 42400918
Alignment:
Q  80 tgattattttaagcaaaagtaacgtggggttcacttaaacattaaggtcttaagtgagactctggatcttagaagaccccca--aaaaatttctc 172  Q
    ||||||||||||  |||||||  ||||||| |||||||  || | ||||||||||||||| |||| ||||||||||||||||  |||||||||||    
T  42401012 tgattattttaataaaaagtagtgtggggtccacttaagaataagggtcttaagtgagaccctgggtcttagaagacccccaagaaaaatttctc 42400918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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