View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_low_2 (Length: 602)
Name: NF1482_low_2
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 588
Target Start/End: Original strand, 1694564 - 1695143
Alignment:
| Q |
13 |
attcttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatc |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
1694564 |
attcttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaatagttccagagattactccaataccattactgatc |
1694663 |
T |
|
| Q |
113 |
tgcaataatcagtaaaaatgtatattaataacatgggttaagtataaatcatt---------------catccaattattaactcacaagtcacaacaat |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||||| |
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| T |
1694664 |
tgcaataatcagtaaaaatgtatattaataacatgggttaagtataaatctttaatccaattgaattacatacaattattaactcacaaatcacaacaat |
1694763 |
T |
|
| Q |
198 |
actataggaatataaattaaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaa |
297 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1694764 |
actataggaatata---------aattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaa |
1694854 |
T |
|
| Q |
298 |
gagagagccagaatggcatgtatttcacactcttggttcttataaccgttgcctgttcatcatatattcatatgtaacaagtttagagaaaatacagtat |
397 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1694855 |
gagagagccagaatggcatgtatttcacactcttggttcttataaccgttgcctgttca--------tcatatgtaacaagtttagagaaaatacagtat |
1694946 |
T |
|
| Q |
398 |
aatcttcatatgatctg------aaattaatggaatagactttacttaccatgatagtaagaggagaagcatacatcaatatgttgaagatatcacaaat |
491 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1694947 |
aatcttcatatgatctgaatataaaattaatggaatagaagttacttaccatgatcgtaagaggagaagcatacatcaatatgttgaagatatcacaaat |
1695046 |
T |
|
| Q |
492 |
aatcccaacaattaaagacctcttggtagtgccatgtaatgccaacattgttatcagaacaatgatagcnnnnnnngcagcctctatgagaagataa |
588 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1695047 |
aatcccaacaattaaagacctcttggtagtgccatgtaatgccaacattgttatcagaacaatgatagcaaaaaaagcagcctctatgagaagataa |
1695143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 555
Target Start/End: Original strand, 1684146 - 1684687
Alignment:
| Q |
16 |
cttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatctgc |
115 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1684146 |
cttatcatcatcaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatctgc |
1684245 |
T |
|
| Q |
116 |
aataatcagtaaaaatgtatattaa-taacatgggttaagtataaatcattcatccaattattaactcacaagtcacaacaatactataggaatataaat |
214 |
Q |
| |
|
| || ||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1684246 |
agtagtcagtgaaagtgtatattaattaatatgggttaagtataaatcattcatccaattattaactcacaagtcacaacaatactataggaatata--- |
1684342 |
T |
|
| Q |
215 |
taaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggc |
314 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
1684343 |
------aattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagccagaatggc |
1684436 |
T |
|
| Q |
315 |
atgtatttcacactcttggttcttataaccgttgcctgttcatcatatattcatatgtaacaagtttagagaaa------------atacagtataatct |
402 |
Q |
| |
|
||||||||||||||||| || |||||||| || ||||| |||||| |||||||||||||||||||||||| ||||||||||| | |
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|
| T |
1684437 |
atgtatttcacactcttagtcgttataacctttttctgttgatcata---tcatatgtaacaagtttagagaaaatactttataagatacagtataa--t |
1684531 |
T |
|
| Q |
403 |
tcatat---gatctgaaattaatggaatagactttacttaccatgatagtaagaggagaagcatacatcaatatgttgaagatatcacaaataatcccaa |
499 |
Q |
| |
|
|||||| || | || ||| ||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||| |||| |
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|
| T |
1684532 |
tcatatctgaatataaagttattggaatagaagttacttaccatgattgtaagaggagaaatatacatcaatatgttgaagacatcacaaacaataccaa |
1684631 |
T |
|
| Q |
500 |
caattaaagacctcttggtagtgccatgtaatgccaacattgttatcagaacaatg |
555 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
1684632 |
caattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatg |
1684687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 215 - 363
Target Start/End: Original strand, 1699864 - 1700012
Alignment:
| Q |
215 |
taaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggc |
314 |
Q |
| |
|
||||| |||||||| |||||||| || || ||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||| |
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|
| T |
1699864 |
taaattaattaccaagacataaatatccaatgggtggatgagagcatatgttgtccagcacaaaccattgaggaagttggttagagagagccaaaatggc |
1699963 |
T |
|
| Q |
315 |
atgtatttcacactcttggttcttataaccgttgcctgttcatcatata |
363 |
Q |
| |
|
||||||||||||||||||||| |||||||| | |||||||||| ||||| |
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|
| T |
1699964 |
atgtatttcacactcttggtttttataaccttggcctgttcattatata |
1700012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 362
Target Start/End: Original strand, 1674181 - 1674322
Alignment:
| Q |
221 |
aattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggcatgtat |
320 |
Q |
| |
|
||||||||| | ||||||||| ||||||| || ||||||||||||||||| || | |||||| || ||| | | |||||| || |||||||||||||| |
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|
| T |
1674181 |
aattaccaggagataaatgtcgaaggggttgatgagagcatatgttgtccaacacaatccattaagaaagatagccagagagggcaagaatggcatgtat |
1674280 |
T |
|
| Q |
321 |
ttcacactcttggttcttataaccgttgcctgttcatcatat |
362 |
Q |
| |
|
||||||||||| ||| ||||||| || ||||||||| |||| |
|
|
| T |
1674281 |
ttcacactctttgtttttataacattttcctgttcattatat |
1674322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 435 - 556
Target Start/End: Original strand, 1700096 - 1700217
Alignment:
| Q |
435 |
acttaccatgatagtaagaggagaagcatacatcaatatgttgaagatatcacaaataatcccaacaattaaagacctcttggtagtgccatgtaatgcc |
534 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| | ||||||| |||||| | || ||||||||||| || || || |||||||||| | |||| |
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|
| T |
1700096 |
acttaccatgattgtaagaggagatgcatacatcatgacattgaagacatcacatagaacaccaacaattaacgatctttttttagtgccatgaagtgcc |
1700195 |
T |
|
| Q |
535 |
aacattgttatcagaacaatga |
556 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
1700196 |
aacattgttattagaacaatga |
1700217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 420 - 492
Target Start/End: Original strand, 1971015 - 1971087
Alignment:
| Q |
420 |
aatggaatagactttacttaccatgatagtaagaggagaagcatacatcaatatgttgaagatatcacaaata |
492 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
1971015 |
aatggaatagaagttacttaccacgatggtaagaggagagacatacatcaatatggggaagatatcacaaata |
1971087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 1970554 - 1970616
Alignment:
| Q |
19 |
atcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagt |
81 |
Q |
| |
|
||||||| |||||||||| |||||| ||||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
1970554 |
atcatcatcaatctgattttctcccttgcacgagtaataagcatataatatgagctgaacagt |
1970616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 1673944 - 1674064
Alignment:
| Q |
21 |
catcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatctgcaataa |
120 |
Q |
| |
|
||||| || ||| ||| |||||| ||||||| |||| |||||| ||||||||||||| || |||||| |||||||||||||||||| || |||| |
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|
| T |
1673944 |
catcatcattcttattttctcccttgcaccaaaaataaacatataatatgagctgaacaaaacctgagattgctccaataccattgctgacctaaaatat |
1674043 |
T |
|
| Q |
121 |
tcagtaaaaatgtatattaat |
141 |
Q |
| |
|
||| || ||||||||||||| |
|
|
| T |
1674044 |
tcaataccaatgtatattaat |
1674064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 1699287 - 1699335
Alignment:
| Q |
60 |
catatagtatgagctgaacagttccagagattactccaataccattgct |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
1699287 |
catatagtatgagctgaacaattccagaaaccactccaataccattgct |
1699335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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