View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_low_20 (Length: 271)
Name: NF1482_low_20
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 8206793 - 8206544
Alignment:
| Q |
17 |
agtatgaaggatctatatttccactcaaatattgtatctgatttctaatgacttggaagataattatgatatatgttgtgttgaagatcaagtgagattg |
116 |
Q |
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| T |
8206793 |
agtatgaaggatctatatttccactcaaatattgtatctgatttctaatgacttggaagataattatgatatatgttgtgttgaagatcaagtgagattg |
8206694 |
T |
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| Q |
117 |
gccgctgaagcatgtcataaaggattaagacataaatatttctatttaagtcgaagtcactgcatcatttttcttttagtttaattctatttatgtttag |
216 |
Q |
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| T |
8206693 |
gccgctgaagcatgtcataaaggattgagacataaatatttctatttaagtcgaagtcactgcatcatttttcttttagtttaattatatttatgtttag |
8206594 |
T |
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| Q |
217 |
cttgtgtacgtactctgatattctgtacattcttttaatttaatttaatt |
266 |
Q |
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| T |
8206593 |
cttgtgtaagtactctgatattctgtacattctcttaatttaatttaatt |
8206544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 42361546 - 42361325
Alignment:
| Q |
24 |
aggatctatatttccactcaaatattgtatctgatttctaatgacttggaagataattatgatatatgttgtgttgaagatcaagtgagattggccgctg |
123 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||| |||||||||||||||||||||||||| ||| |
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| T |
42361546 |
aggatctacatttccactcaaatattgtatctgatttctaatgaatcggacgataattataatatatgctgtgttgaagatcaagtgagattggcaactg |
42361447 |
T |
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| Q |
124 |
aagcatgtcataaaggattaagacat-aaatatttctatttaagtcgaagtcactgcatcatttttcttttagtttaattctatttatgtttagcttgtg |
222 |
Q |
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| T |
42361446 |
aaatatgatctaaaggattgagacataaaatatttcaatactagt-gacgttactgcatcatttttcttttaatttgattctatttatgtttcacttgtg |
42361348 |
T |
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| Q |
223 |
ta-cgtactctgatattctgtac |
244 |
Q |
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|| |||||||| |||| ||||| |
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| T |
42361347 |
tagagtactctgctattttgtac |
42361325 |
T |
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