View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_low_26 (Length: 238)
Name: NF1482_low_26
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_low_26 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 6353139 - 6353359
Alignment:
| Q |
18 |
aggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggt |
117 |
Q |
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| T |
6353139 |
aggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttaaactcagggttattgagttgtaatgtaactacagatctcagttgaggt |
6353238 |
T |
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| Q |
118 |
atgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaacagtgggacttc |
217 |
Q |
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| T |
6353239 |
atgacattttgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaaagattcatctcttggaaggtaaacagtgggacttc |
6353338 |
T |
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| Q |
218 |
gagtctcactcttaggatctg |
238 |
Q |
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||||||||||||||||||||| |
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| T |
6353339 |
gagtctcactcttaggatctg |
6353359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 6363935 - 6364155
Alignment:
| Q |
18 |
aggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggt |
117 |
Q |
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| T |
6363935 |
aggaagcctgattccaccttcatagagcgagcgcacatcttcaaaggtgttaaactcaggctcatggaattgtaatgtaactatagatcttaatcgaggt |
6364034 |
T |
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| Q |
118 |
atgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaacagtgggacttc |
217 |
Q |
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| T |
6364035 |
atgacattttgagatgcagatttgagtatgtgaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttgggaggtaaacagtgtcacttc |
6364134 |
T |
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| Q |
218 |
gagtctcactcttaggatctg |
238 |
Q |
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| T |
6364135 |
gactctcactcttaggatctg |
6364155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 7460037 - 7460257
Alignment:
| Q |
18 |
aggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggt |
117 |
Q |
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|||||||||||||||||| |||||||||||||| | ||||| ||||||||| ||||| ||||||||||||||||| ||| || ||||||||| | |||| |
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| T |
7460037 |
aggaagcttaattccaccatcgtagagagagcgtatatcttcaaaggtgttaaactcagggttattgagttgtaatgtagctttagatctcaaattaggt |
7460136 |
T |
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| Q |
118 |
atgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaacagtgggacttc |
217 |
Q |
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| T |
7460137 |
atgactctgtgagttgctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaatagcgtcacttc |
7460236 |
T |
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| Q |
218 |
gagtctcactcttaggatctg |
238 |
Q |
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|| |||||||||||||||||| |
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| T |
7460237 |
gactctcactcttaggatctg |
7460257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 7471615 - 7471800
Alignment:
| Q |
18 |
aggaagcttaattccaccctcgtagagagagcgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggt |
117 |
Q |
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|||||||||||||||||| ||||||||||| || ||||| ||||||||| ||||| ||||||||||||||||| |||||| ||||||||| | ||| |
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| T |
7471615 |
aggaagcttaattccaccatcgtagagagatcgtgtatcttcaaaggtgttaaactcggggttattgagttgtaatgtaactttagatctcaaattaggc |
7471714 |
T |
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| Q |
118 |
atgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaa |
205 |
Q |
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| T |
7471715 |
atgac--tctgagttgctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaa |
7471800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 238
Target Start/End: Original strand, 6424890 - 6425033
Alignment:
| Q |
95 |
taactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctct |
194 |
Q |
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||||||||||| |||| |||||||| ||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
6424890 |
taactacagatttcaaggaaggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcctcatctct |
6424989 |
T |
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| Q |
195 |
tggaaggtaaacagtgggacttcgagtctcactcttaggatctg |
238 |
Q |
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| T |
6424990 |
tggaaggtaaacagtgccgctccgactctcactcttaggatctg |
6425033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 6332781 - 6332936
Alignment:
| Q |
52 |
acatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgtaaa |
151 |
Q |
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||||||| ||| ||||| ||||| || | ||||| |||||| |||| | |||||| ||||||||||| ||||| |||||||||||||| ||||| |||| |
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| T |
6332781 |
acatcttcaaaagtgttaaactctggctgattgaattgtaatgtaagtgcagatcgtaattgaggtataacattttgagatgctgatttcagtatataaa |
6332880 |
T |
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| Q |
152 |
caagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaaca |
207 |
Q |
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| T |
6332881 |
caagaaagtctgaagacttcaagtggccaaatgattcatctcttggaatgtaaaca |
6332936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 6275327 - 6275483
Alignment:
| Q |
49 |
cgcacatcttgaaaggtgttgaactccgggttattgagttgtaacgtaactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgt |
148 |
Q |
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| T |
6275327 |
cgcacatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgt |
6275426 |
T |
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| Q |
149 |
aaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaa |
205 |
Q |
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|||||||||| ||||| ||||| ||| ||||||||||||||||||||||| |||| |
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| T |
6275427 |
aaacaagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaa |
6275483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 6322224 - 6322352
Alignment:
| Q |
79 |
ttattgagttgtaacgtaactacagatctcaattgaggtatgacattctgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtc |
178 |
Q |
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|||||||||||||| |||| | ||||| ||||||||||||| | | ||||| |||||||||||||||||||||||||| ||||| ||||| ||| | |
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| T |
6322224 |
ttattgagttgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgac |
6322323 |
T |
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| Q |
179 |
caaatgattcatctcttggaaggtaaaca |
207 |
Q |
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|||||| |||||||||||||| ||||||| |
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| T |
6322324 |
caaatgcttcatctcttggaacgtaaaca |
6322352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 6289828 - 6289908
Alignment:
| Q |
127 |
tgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaatgattcatctcttggaaggtaaaca |
207 |
Q |
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|||||||||||||| |||| || | ||||||| ||||| ||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
6289828 |
tgagatgctgatttcagtaggttatcaagaaattctgaagacttcttgtgatcaaatgattcatctcttggaatgtaaaca |
6289908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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