View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_low_27 (Length: 238)
Name: NF1482_low_27
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 7285554 - 7285769
Alignment:
| Q |
11 |
caatgaattttagaaattggacaagtcttaattggagcagaaactggtcatgttggtgttgcaccaacacccgagtcttctgtttaattccatttattgg |
110 |
Q |
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| T |
7285554 |
caataaattttagaaattggacaagtcttaattggagcagaacctggtcatgttggtgttgcaccaacacccgagtcttctatttaattccatttattgg |
7285653 |
T |
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| Q |
111 |
tataaattacac----cnnnnnnnnnnactatttcataccaaatgtatatatatttatttaatgtaattttatatcatgcaggaatgacttttttgaata |
206 |
Q |
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| T |
7285654 |
tataaattacactttttttttttttttactatttcataccaaatgtatatatatttatttaatgtaattttatatcatgcaggaatgacttttttgaata |
7285753 |
T |
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| Q |
207 |
ttttggagtcaaatat |
222 |
Q |
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|||||||||||||||| |
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| T |
7285754 |
ttttggagtcaaatat |
7285769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 13308824 - 13308876
Alignment:
| Q |
170 |
gtaattttatatcatgcaggaatgacttttttgaatattttggagtcaaatat |
222 |
Q |
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| T |
13308824 |
gtaatttaatgtcatgcaggaatgacttttttggatattttggagtcaaatat |
13308876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 14592745 - 14592693
Alignment:
| Q |
170 |
gtaattttatatcatgcaggaatgacttttttgaatattttggagtcaaatat |
222 |
Q |
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| T |
14592745 |
gtaatttaatgtcatgcaagaatgactttttttgatattttggagtcaaatat |
14592693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 13786886 - 13786938
Alignment:
| Q |
170 |
gtaattttatatcatgcaggaatgacttttttgaatattttggagtcaaatat |
222 |
Q |
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| T |
13786886 |
gtaatttaatgtcatgcaggaatgacttttttggatattttggagtcaaatat |
13786938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 22599021 - 22599094
Alignment:
| Q |
149 |
atgtatatatatttatttaatgtaattttatatcatgcaggaatgactttttt--gaatattttggagtcaaat |
220 |
Q |
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| T |
22599021 |
atgtatatatatttatttagtgtaattttacgtactgcaggagtgactttttttgggatattttgaagtcaaat |
22599094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 22348450 - 22348523
Alignment:
| Q |
149 |
atgtatatatatttatttaatgtaattttatatcatgcaggaatgactttttt--gaatattttggagtcaaat |
220 |
Q |
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||||||||||||||||||| ||||||||||| | || |||| |||||||||| | ||||||||||||||||| |
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| T |
22348450 |
atgtatatatatttatttagtgtaattttatgtactgtaggagtgactttttttgggatattttggagtcaaat |
22348523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 6837424 - 6837372
Alignment:
| Q |
149 |
atgtatatatatttatttaatgtaattttatatcatgcaggaatgactttttt |
201 |
Q |
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||||||||||||||||||| ||||||||||| | ||||||| |||||||||| |
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| T |
6837424 |
atgtatatatatttatttagtgtaattttatgtactgcaggagtgactttttt |
6837372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 16001375 - 16001448
Alignment:
| Q |
149 |
atgtatatatatttatttaatgtaattttatatcatgcaggaatgacttt--tttgaatattttggagtcaaat |
220 |
Q |
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|||||| |||||||||||| ||||||||||| | ||||||| ||||||| || | ||||||||||||||||| |
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| T |
16001375 |
atgtatgtatatttatttagtgtaattttatgtactgcaggagtgacttttcttgggatattttggagtcaaat |
16001448 |
T |
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