View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_low_29 (Length: 236)
Name: NF1482_low_29
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35631479 - 35631701
Alignment:
| Q |
1 |
tatctcatagtgagtgttactccaaaattttagnnnnnnnnaagttaaaattaatagttataccatcatatgcatannnnnnnaacaacatattcattat |
100 |
Q |
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| T |
35631479 |
tatctcatagtgagtgttactccaaaattttagttttttttaagttaaaattaatagttataccatcatatgcatattttttaaacaacatattcattat |
35631578 |
T |
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| Q |
101 |
gaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttatcttgtgaatatttatatggcaacaaactcatattgttcaagaa |
200 |
Q |
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| T |
35631579 |
gaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatactttatcttgtgaatatttatatggcaacaaactcatattgttcaagaa |
35631678 |
T |
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| Q |
201 |
aagctagtaacaaactccttttg |
223 |
Q |
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| T |
35631679 |
aagctagtaacaaactccttttg |
35631701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 10300272 - 10300186
Alignment:
| Q |
87 |
aacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttatcttgtgaatatttata |
173 |
Q |
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| T |
10300272 |
aacatattcattatgaaatttgataactttagtgtaacaaagttgtcgacagagattcaatcatagtctatgctgtaaatatttata |
10300186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 10320708 - 10320638
Alignment:
| Q |
87 |
aacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttat |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||||||| ||||| |
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| T |
10320708 |
aacatattcattatgaaatttgataactttagtgtaacaaagttgtcgacagaaaatcaatcatagtttat |
10320638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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