View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1482_low_3 (Length: 501)

Name: NF1482_low_3
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1482_low_3
NF1482_low_3
[»] chr4 (9 HSPs)
chr4 (18-492)||(40008241-40008715)
chr4 (152-203)||(56480341-56480392)
chr4 (151-204)||(23819081-23819134)
chr4 (151-204)||(36722694-36722747)
chr4 (122-204)||(2996565-2996644)
chr4 (150-201)||(3175946-3175997)
chr4 (150-187)||(6130707-6130744)
chr4 (159-204)||(28252222-28252267)
chr4 (151-196)||(47800623-47800668)
[»] chr5 (6 HSPs)
chr5 (150-238)||(10296372-10296457)
chr5 (151-195)||(17258908-17258952)
chr5 (162-204)||(14257457-14257499)
chr5 (151-204)||(4855690-4855743)
chr5 (50-82)||(17369315-17369347)
chr5 (160-204)||(18543230-18543274)
[»] chr7 (11 HSPs)
chr7 (153-196)||(1350269-1350312)
chr7 (152-204)||(30456476-30456528)
chr7 (151-203)||(46104592-46104644)
chr7 (160-202)||(36370663-36370705)
chr7 (150-204)||(40439046-40439100)
chr7 (152-189)||(27378854-27378891)
chr7 (151-204)||(31338500-31338553)
chr7 (151-204)||(44151505-44151558)
chr7 (150-203)||(44821952-44822005)
chr7 (151-203)||(3610765-3610817)
chr7 (45-81)||(25670507-25670543)
[»] chr2 (14 HSPs)
chr2 (150-203)||(9477945-9477998)
chr2 (152-204)||(15377757-15377809)
chr2 (151-203)||(43985028-43985080)
chr2 (151-202)||(4026811-4026862)
chr2 (151-201)||(10563583-10563633)
chr2 (150-204)||(36863649-36863703)
chr2 (151-196)||(44644278-44644323)
chr2 (151-203)||(1899934-1899986)
chr2 (151-199)||(6988112-6988160)
chr2 (202-238)||(13864589-13864625)
chr2 (53-81)||(23142499-23142527)
chr2 (53-81)||(23554289-23554317)
chr2 (152-204)||(39983334-39983386)
chr2 (160-204)||(43141863-43141907)
[»] chr1 (12 HSPs)
chr1 (155-204)||(25005826-25005875)
chr1 (151-204)||(27887143-27887196)
chr1 (151-203)||(43332477-43332529)
chr1 (151-202)||(37842380-37842431)
chr1 (150-204)||(7218098-7218152)
chr1 (151-189)||(38651456-38651494)
chr1 (160-201)||(2778661-2778702)
chr1 (151-204)||(30257675-30257728)
chr1 (165-202)||(44940335-44940372)
chr1 (151-203)||(4700091-4700143)
chr1 (151-203)||(34290229-34290281)
chr1 (160-239)||(50319230-50319306)
[»] chr8 (6 HSPs)
chr8 (50-81)||(10559981-10560012)
chr8 (244-282)||(8062208-8062246)
chr8 (150-196)||(39551233-39551279)
chr8 (151-204)||(6509328-6509381)
chr8 (151-204)||(10075576-10075629)
chr8 (151-203)||(9956839-9956891)
[»] chr3 (8 HSPs)
chr3 (50-81)||(2081009-2081040)
chr3 (150-204)||(24158527-24158581)
chr3 (151-201)||(40665424-40665474)
chr3 (151-196)||(20502093-20502138)
chr3 (151-204)||(52618995-52619048)
chr3 (151-203)||(1816576-1816628)
chr3 (151-203)||(34382935-34382987)
chr3 (151-236)||(36887463-36887549)
[»] scaffold0020 (1 HSPs)
scaffold0020 (162-204)||(160009-160051)
[»] chr6 (7 HSPs)
chr6 (150-200)||(25100039-25100089)
chr6 (151-204)||(1497973-1498026)
chr6 (154-187)||(29837112-29837145)
chr6 (151-204)||(33911307-33911360)
chr6 (49-81)||(13908353-13908385)
chr6 (151-203)||(26694871-26694923)
chr6 (151-203)||(31812038-31812090)


Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Complemental strand, 40008715 - 40008241
Alignment:
Q  18 gttttaactgtattaagtaagtttttgtcgaaattgacttatttgaacttatctattgacataattacaagtcagcctactcgagagaactcacggaaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||    
T  40008715 gttttaactgtattaagtaagtttttgtcgaaattgacttatttgaacttatctgttgacataagtactagtcagcctactcgagagaactcatggaaat 40008616  T
Q  118 agccatgacatgtctataagctttttaatcttacttatttttataagctcttcaggatagtttatgaaaacaccttataacttatattttaccttttgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||    
T  40008615 agccatgacatgtctataagctttttaatcttacttatttttataagctcttcaggatagtttatgaaaattccttataacttacattttaccttttgtt 40008516  T
Q  218 acagaaataggttatacataagatcttatgataaatgcttatagcgtaagtgcttaattaagttgtttattccatcagggctaagtatccattcctacca 317  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40008515 acagaaataggttatacataagctcttatgataaatggttatagcgcaagtgcttaattaagttgtttattcaatcagggctaagtatccattcctacca 40008416  T
Q  318 gttggctgtaggagtctaatagctttttcccatattaaatgttcttttcatccaagtcaaagtttctcatggttgaatcttttactaagcaataatatgt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40008415 gttggctgtaggagtctaatagctttttcccatattaaatgttcttttcatccaagtcaaagtttctcattgttgaatcttttactaagcaataatatgt 40008316  T
Q  418 tttctatataagaaaaaatccactagaatatagatgcacaattttatttgttatctgcattgaacccttctgtgc 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40008315 tttctatataagaaaaaatccactagaatatagatgcacaattttatttgttatctgcattgaacccttctgtgc 40008241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 56480392 - 56480341
Alignment:
Q  152 ttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    ||||||| ||||||||| || ||||||||||||||||| |||||||||||||    
T  56480392 ttattttcataagctctccaagatagtttatgaaaacagcttataacttata 56480341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 23819134 - 23819081
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||| ||||||||||||| ||||| |||||||||||  |||||||||||||    
T  23819134 cttatttctataagctcttcaagatagcttatgaaaacatgttataacttatat 23819081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 36722694 - 36722747
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||| |||||||||||||||||  |||| |||||| ||||||||||||||    
T  36722694 cttattttcataagctcttcaggataacttatcaaaacaacttataacttatat 36722747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 2996644 - 2996565
Alignment:
Q  122 atgacatgtctataagctttttaatcttacttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||||| |||||||||||  ||  ||||||||| ||| ||||| || ||||| ||||||||||| ||||||||||||||    
T  2996644 atgacatgtccataagcttttt--tca-acttattttcatacgctctccaagatagcttatgaaaacaacttataacttatat 2996565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 3175997 - 3175946
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaacaccttataactta 201  Q
    |||||||| || |||| ||||||||||| ||||||||||| |||||||||||    
T  3175997 acttatttctacaagcccttcaggatagcttatgaaaacagcttataactta 3175946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 6130707 - 6130744
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaa 187  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  6130707 acttatttttataagctcgtcaagatagtttatgaaaa 6130744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 28252267 - 28252222
Alignment:
Q  159 tataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||||||||| ||||| |||||||||| |||||| ||||||||    
T  28252267 tataagctcttcatgatagcttatgaaaactccttattacttatat 28252222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 47800668 - 47800623
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttata 196  Q
    |||||||| |||||||||||| ||||| ||||||||||| ||||||    
T  47800668 cttattttcataagctcttcaagatagcttatgaaaacagcttata 47800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 10296457 - 10296372
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttatattttaccttttgttacagaaataggttatacataa 238  Q
    ||||||||| ||||||||| |||   || ||||||||||  |||||| ||||||||||||||||||||| |||||||| ||| ||||||    
T  10296457 acttattttcataagctctccag---agcttatgaaaaccacttatagcttatattttaccttttgttatagaaatagcttacacataa 10296372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 17258908 - 17258952
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttat 195  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  17258908 cttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 14257499 - 14257457
Alignment:
Q  162 aagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||| || ||||||||||||||||||||||||||||||||    
T  14257499 aagctctccaagatagtttatgaaaacaccttataacttatat 14257457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 4855743 - 4855690
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||| | |||||||||  |||||||||||||||||| ||||||||||||||    
T  4855743 cttatttctgtaagctctttgggatagtttatgaaaacaacttataacttatat 4855690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 17369347 - 17369315
Alignment:
Q  50 attgacttatttgaacttatctattgacataat 82  Q
    ||||||||||||||||||||||| |||||||||    
T  17369347 attgacttatttgaacttatctactgacataat 17369315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 18543230 - 18543274
Alignment:
Q  160 ataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||||| |||||||| ||||||||||| |||||| |||||||    
T  18543230 ataagctctccaggatagcttatgaaaacaacttatatcttatat 18543274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 1350269 - 1350312
Alignment:
Q  153 tatttttataagctcttcaggatagtttatgaaaacaccttata 196  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  1350269 tattttcataagctcttcaggatagtttatgaaaacagcttata 1350312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 30456476 - 30456528
Alignment:
Q  152 ttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||| ||||||||| || ||||||||||||||||  ||||||||||||||    
T  30456476 ttattttcataagctctccaagatagtttatgaaaaccacttataacttatat 30456528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 46104592 - 46104644
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    |||||||| ||||||||||||| |||| ||||||||||| |||||| ||||||    
T  46104592 cttattttcataagctcttcagcatagcttatgaaaacaacttatagcttata 46104644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 36370705 - 36370663
Alignment:
Q  160 ataagctcttcaggatagtttatgaaaacaccttataacttat 202  Q
    |||||||||||||||||||||||| ||||| |||||| |||||    
T  36370705 ataagctcttcaggatagtttatggaaacaacttatagcttat 36370663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 40439100 - 40439046
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||||  |||||||||||||||||| | ||||||||| |||||||| |||||    
T  40439100 acttatttccataagctcttcaggatagctaatgaaaacaacttataacatatat 40439046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 27378854 - 27378891
Alignment:
Q  152 ttatttttataagctcttcaggatagtttatgaaaaca 189  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  27378854 ttattttcataagctctccaggatagtttatgaaaaca 27378891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 31338553 - 31338500
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||| ||||||||   ||||||||||||| ||||| ||||||||||||||    
T  31338553 cttattttcataagctccataggatagtttatggaaacaacttataacttatat 31338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 44151505 - 44151558
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||  ||||||| |||| ||||||||||||||||| |||||| |||||||    
T  44151505 cttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatat 44151558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 44822005 - 44821952
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    ||||||||| ||||| ||| ||| |||| ||||||||||| |||||||||||||    
T  44822005 acttattttcataagttctccagaatagcttatgaaaacagcttataacttata 44821952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 3610765 - 3610817
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    ||||||| ||||||||||  ||||||||||| ||||||| |||||| ||||||    
T  3610765 cttatttctataagctctctaggatagtttacgaaaacaacttatagcttata 3610817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 25670507 - 25670543
Alignment:
Q  45 tcgaaattgacttatttgaacttatctattgacataa 81  Q
    |||||||||||||| |||| |||||||||||||||||    
T  25670507 tcgaaattgacttacttgagcttatctattgacataa 25670543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 9477998 - 9477945
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    ||||||||| |||| |||| |||||||| ||||||||||| |||||||||||||    
T  9477998 acttattttcataacctctccaggatagcttatgaaaacaacttataacttata 9477945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 15377809 - 15377757
Alignment:
Q  152 ttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||| |||||||| |||| |||| ||||||||||| ||||||||||||||    
T  15377809 ttattttcataagctcctcagaatagcttatgaaaacagcttataacttatat 15377757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 43985028 - 43985080
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    |||||||| |||||||||||| ||||| ||||||||||| ||||||| |||||    
T  43985028 cttattttcataagctcttcaagatagcttatgaaaacaacttataatttata 43985080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 4026862 - 4026811
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttat 202  Q
    |||||||| ||||| ||||||||||| |||||||||||| ||||||| ||||    
T  4026862 cttattttcataagttcttcaggataatttatgaaaacagcttataatttat 4026811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 10563583 - 10563633
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataactta 201  Q
    ||||||||  |||||||||||| |||| ||||||||||| |||||||||||    
T  10563583 cttattttcttaagctcttcagcatagcttatgaaaacaacttataactta 10563633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 36863649 - 36863703
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||||| ||||||||| || ||||| |||||||||||  |||||||||||||    
T  36863649 acttattttcataagctctccaagatagcttatgaaaacaatttataacttatat 36863703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 44644323 - 44644278
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttata 196  Q
    |||||||| |||||||||||| |||||||| |||||||| ||||||    
T  44644323 cttattttcataagctcttcaagatagtttttgaaaacagcttata 44644278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 1899986 - 1899934
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    ||||||||||||| ||||| || ||||||||||||||||  ||||| ||||||    
T  1899986 cttatttttataaactctttagaatagtttatgaaaacattttatagcttata 1899934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 6988160 - 6988112
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataact 199  Q
    ||||||| ||||| ||||||| ||||| ||||||||||| |||||||||    
T  6988160 cttatttctataaactcttcaagatagcttatgaaaacaacttataact 6988112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 13864625 - 13864589
Alignment:
Q  202 tattttaccttttgttacagaaataggttatacataa 238  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  13864625 tattttaccttttgttatagaaatagcttatacataa 13864589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 23142499 - 23142527
Alignment:
Q  53 gacttatttgaacttatctattgacataa 81  Q
    |||||||||||||||||||||||||||||    
T  23142499 gacttatttgaacttatctattgacataa 23142527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 23554289 - 23554317
Alignment:
Q  53 gacttatttgaacttatctattgacataa 81  Q
    |||||||||||||||||||||||||||||    
T  23554289 gacttatttgaacttatctattgacataa 23554317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 39983386 - 39983334
Alignment:
Q  152 ttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||| || |||||| |||||||| ||||||||||| |||||| |||||||    
T  39983386 ttattttcattagctctccaggatagcttatgaaaacaacttatagcttatat 39983334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 43141907 - 43141863
Alignment:
Q  160 ataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||| ||||||||||||| ||||||||||| |||||| |||||||    
T  43141907 ataaactcttcaggatagcttatgaaaacatcttatagcttatat 43141863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 25005826 - 25005875
Alignment:
Q  155 tttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||||||||| |||||||| ||||||||||| |||||| |||||||    
T  25005826 tttttataagctctccaggatagcttatgaaaacaacttatagcttatat 25005875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 27887143 - 27887196
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||||||| ||||| || ||||||||||||||||| |||||| |||||||    
T  27887143 cttatttttatatgctctccatgatagtttatgaaaacaacttatagcttatat 27887196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 43332529 - 43332477
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    |||||||| |||||||||||| ||||| ||||||||||| |||| ||||||||    
T  43332529 cttattttaataagctcttcaagatagcttatgaaaacagcttacaacttata 43332477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 37842380 - 37842431
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttat 202  Q
    |||||||||||||| |||||| ||||| ||||||||||| |||||| |||||    
T  37842380 cttatttttataagttcttcaagatagcttatgaaaacaacttatagcttat 37842431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 7218098 - 7218152
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||||| ||||| ||| |||||||| ||||||||||| |||||| |||||||    
T  7218098 acttattttcataagttctccaggataggttatgaaaacaacttatagcttatat 7218152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 38651456 - 38651494
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaaca 189  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  38651456 cttatttttataagctctccaggatagcttatgaaaaca 38651494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 2778702 - 2778661
Alignment:
Q  160 ataagctcttcaggatagtttatgaaaacaccttataactta 201  Q
    |||||||||||| ||||||||||||| ||| |||||||||||    
T  2778702 ataagctcttcaagatagtttatgaatacaacttataactta 2778661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 30257728 - 30257675
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||| ||||||| || |||||||||||||||||||| |||| | |||||||    
T  30257728 cttatttctataagccctccaggatagtttatgaaaacaacttaaagcttatat 30257675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 44940372 - 44940335
Alignment:
Q  165 ctcttcaggatagtttatgaaaacaccttataacttat 202  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  44940372 ctcttcaggatagattatgaaaacaacttataacttat 44940335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 4700091 - 4700143
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    |||||||| ||||||||| ||||||||||||| ||||||  ||||| ||||||    
T  4700091 cttattttcataagctctccaggatagtttataaaaacagtttatagcttata 4700143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 34290281 - 34290229
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    |||||||| ||||| |||||| ||||| ||||||||||| |||||| ||||||    
T  34290281 cttattttcataagttcttcaagatagcttatgaaaacagcttatagcttata 34290229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 50319306 - 50319230
Alignment:
Q  160 ataagctcttcaggatagtttatgaaaacaccttataacttatattttaccttttgttacagaaataggttatacataag 239  Q
    |||||||||  ||||||| ||||||||||| |||   |||| ||||||| ||||||||| |||||||| |||||||||||    
T  50319306 ataagctctctaggatagcttatgaaaacaacttg--actt-tattttatcttttgttatagaaatagcttatacataag 50319230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 10559981 - 10560012
Alignment:
Q  50 attgacttatttgaacttatctattgacataa 81  Q
    ||||||||||||||||||||||||||||||||    
T  10559981 attgacttatttgaacttatctattgacataa 10560012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 8062246 - 8062208
Alignment:
Q  244 tatgataaatgcttatagcgtaagtgcttaattaagttg 282  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  8062246 tatgataaacgcttatagtgtaagtgcttaattaagttg 8062208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 39551233 - 39551279
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaacaccttata 196  Q
    ||||||||||||||||||| ||||| || ||||||||||| ||||||    
T  39551233 acttatttttataagctctccaggaaagcttatgaaaacaacttata 39551279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 6509328 - 6509381
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||  ||||||||| |||||||| ||||||||||| |||||| |||||||    
T  6509328 cttatttcaataagctctccaggatagcttatgaaaacagcttatagcttatat 6509381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 10075576 - 10075629
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||| |||||||||  ||||||| ||||||||| | ||||||||||||||    
T  10075576 cttattttcataagctctctaggatagcttatgaaaatagcttataacttatat 10075629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 9956839 - 9956891
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    |||||||| ||||| ||| || ||||| ||||||||||| |||||||||||||    
T  9956839 cttattttcataagttctccaagatagattatgaaaacaacttataacttata 9956891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 81
Target Start/End: Original strand, 2081009 - 2081040
Alignment:
Q  50 attgacttatttgaacttatctattgacataa 81  Q
    ||||||||||||||||||||||||||||||||    
T  2081009 attgacttatttgaacttatctattgacataa 2081040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 24158527 - 24158581
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    ||||||||  ||||||||| |||||||| ||||||||||| ||||| ||||||||    
T  24158527 acttatttccataagctctccaggatagcttatgaaaacagcttattacttatat 24158581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 40665474 - 40665424
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataactta 201  Q
    |||||||||||||||||| || ||||  ||||||||||| |||||||||||    
T  40665474 cttatttttataagctctccaagataacttatgaaaacatcttataactta 40665424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 20502093 - 20502138
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttata 196  Q
    |||||| | |||||||||||||||||| ||||||||||| ||||||    
T  20502093 cttattctcataagctcttcaggatagcttatgaaaacagcttata 20502138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 52619048 - 52618995
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||| | |||||||||| ||||| || |||||||| ||||||||||||||    
T  52619048 cttattttcacaagctcttcaagatagcttgtgaaaacagcttataacttatat 52618995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 1816628 - 1816576
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    |||||||| ||||||||| ||| |||| ||||||||||| |||||| ||||||    
T  1816628 cttattttgataagctctccagtatagcttatgaaaacaacttatatcttata 1816576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 34382987 - 34382935
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    ||||||||  |||||| |||||||||| ||||||||| | |||||||||||||    
T  34382987 cttattttcttaagcttttcaggatagcttatgaaaagaacttataacttata 34382935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 36887549 - 36887463
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacacct--tataacttatattttaccttttgttacagaaataggttatacat 236  Q
    |||||||| ||||| |||||| ||| | ||||||||||| ||  ||||||||| |||||| ||||||||| |||||||  ||||||||    
T  36887549 cttattttcataagttcttcaagatggcttatgaaaacaacttatataactta-attttatcttttgttatagaaataacttatacat 36887463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 160009 - 160051
Alignment:
Q  162 aagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||    
T  160009 aagctctttaggatagcttatgaaaacatcttataacttatat 160051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 25100089 - 25100039
Alignment:
Q  150 acttatttttataagctcttcaggatagtttatgaaaacaccttataactt 200  Q
    |||||||| ||||||||||| | ||||| ||||||||||| ||||||||||    
T  25100089 acttatttctataagctctttaagatagcttatgaaaacaacttataactt 25100039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 1498026 - 1497973
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||| ||||||||| || ||||||||||||||||  ||||||||| ||||    
T  1498026 cttattttcataagctctccaagatagtttatgaaaacttcttataactcatat 1497973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 29837112 - 29837145
Alignment:
Q  154 atttttataagctcttcaggatagtttatgaaaa 187  Q
    ||||| ||||||||||||||||||||||||||||    
T  29837112 attttcataagctcttcaggatagtttatgaaaa 29837145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 33911307 - 33911360
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttatat 204  Q
    |||||||| | || || |||||||||||||||||||||| ||||||| ||||||    
T  33911307 cttattttcacaaacttttcaggatagtttatgaaaacagcttataaattatat 33911360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 13908385 - 13908353
Alignment:
Q  49 aattgacttatttgaacttatctattgacataa 81  Q
    |||||||||||||||||||||||| ||||||||    
T  13908385 aattgacttatttgaacttatctactgacataa 13908353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 26694923 - 26694871
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    |||||||| ||||| |||||| |||||||||||||||||  ||||||| ||||    
T  26694923 cttattttcataagttcttcaagatagtttatgaaaacaatttataacatata 26694871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 31812038 - 31812090
Alignment:
Q  151 cttatttttataagctcttcaggatagtttatgaaaacaccttataacttata 203  Q
    |||||||| ||||||||| || ||||| ||||||||||| |||||| ||||||    
T  31812038 cttattttcataagctctccaagatagcttatgaaaacaacttatatcttata 31812090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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