View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1482_low_5 (Length: 438)
Name: NF1482_low_5
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_low_5 |
 | |
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| [»] scaffold0252 (1 HSPs) |
| | |
|
| [»] scaffold0669 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
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| [»] scaffold0027 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0252 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 23043 - 22628
Alignment:
| Q |
1 |
acaaatcacaagatttatgaatcgattcaagcatttttcatatgaagattgaactgattcaaatctacatagtcaataaattgaatcgaatcataaagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23043 |
acaaatcacaagatttatgaatcgattcaagcattttccatatgaagattgaaccgattcaaatctacatagtcaataaattgaatcgaatcataaagtt |
22944 |
T |
|
| Q |
101 |
cagataaagattgatatgattcaaagaacagtgatacaaatcaattaaggcaaaga----ataatagagaggtcaaataaatcgattcaaaaatttcaat |
196 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
22943 |
cagaaaaagattgatatgattcaaagaacaatgatacaaatcaattaat-caaaggtcagataccagagaggtcaaataaatcgattcaaaaatttcaat |
22845 |
T |
|
| Q |
197 |
gaaaagtttgaatcgaatcacacccattaaaaccaaagatacctgaggcaaaggatgattcgattcacaattgcttttaaaacaatttgaatcgattcag |
296 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
22844 |
gaaaagtttgaatcgaatcacacccataaaaaccaaagatacatgagggaaaggatgattcgattcagaattgcttttaaaacaatttgaatcgaatcag |
22745 |
T |
|
| Q |
297 |
acacacataaaaacacaatctgagaaaacgtgaccttcaagagactcctaaacatagtaataatgtttgttaacatatgatactattgtagaggaccata |
396 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
22744 |
acacacataaaaacacaatc----------tgaccttcaagaaactcctaaacatagtgctaatgtttgttaacatgtgatactattgtagaggaccata |
22655 |
T |
|
| Q |
397 |
gatcatggattgactagggtgctttat |
423 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
22654 |
gatcatggattgactagggtgttttat |
22628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 112 - 423
Target Start/End: Original strand, 34659817 - 34660130
Alignment:
| Q |
112 |
tgatatgattcaaagaacagtgatacaaatcaattaaggcaaaga----ataatagagaggtcaaataaatcgattcaaaaat-ttcaatgaaaagtttg |
206 |
Q |
| |
|
||||||||||||||||| | | |||||||||||||||| |||||| ||| || |||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
34659817 |
tgatatgattcaaagaataattatacaaatcaattaag-caaagatcatataccagttaggtcaaataaatcgattcaaaaaacttcaatgaaaaatttg |
34659915 |
T |
|
| Q |
207 |
aatcgaatcacacccattaaaaccaaagatacctgaggcaaaggatgattcgattcacaattgcttttaaaacaatttgaatcgattcagacacacataa |
306 |
Q |
| |
|
|||| ||| | ||||| || |||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| |||||||| ||||| |
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|
| T |
34659916 |
aatcaaattatacccaa-aacaccaaagatacctgaggcaaaggatgattcgattcaaaattacttt-aaaacaatttgaatcgaatcagacacgcataa |
34660013 |
T |
|
| Q |
307 |
aaacacaatctgagaaaacgtgaccttcaagagactcctaaacatagtaataatgtttgttaacatatgatactattgtagaggaccatagatcatggat |
406 |
Q |
| |
|
||||||| | ||||||||| |||||| ||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
34660014 |
aaacacagtttgagaaaacttgacctccaagaaactcctaaacatgatattaatgtttgttaacatatgatactattgtagaggaccagagatcatggat |
34660113 |
T |
|
| Q |
407 |
tgactagggtgctttat |
423 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
34660114 |
tgattagggtgctttat |
34660130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 16533592 - 16533448
Alignment:
| Q |
277 |
aacaatttgaatcgattcagacacacataaaaacacaatctgagaaaacgtgaccttcaagagactcctaaacatagtaataatgtttgttaacatatga |
376 |
Q |
| |
|
|||| ||||||| || ||| |||||||||||| |||||| ||| ||||| ||| |||||| |||| |||||| | || ||| |||||| ||||| |
|
|
| T |
16533592 |
aacactttgaattgaatcacacacacataaaagcacaatttgataaaacatgaatctcaagaaactcttaaacacaatactaacgtttgtacacatagtg |
16533493 |
T |
|
| Q |
377 |
tactattgtagaggaccatagatcatggattgactagggtgcttt |
421 |
Q |
| |
|
|||||||||| ||| || |||||| ||||| ||||| ||||||| |
|
|
| T |
16533492 |
tactattgtatagggcctgagatcaaggattaactagcgtgcttt |
16533448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 22336722 - 22336666
Alignment:
| Q |
81 |
ttgaatcgaatcataaagttcagataaagattgatatgattcaaagaacagtgatac |
137 |
Q |
| |
|
||||||| |||||| || | ||||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
22336722 |
ttgaatcaaatcatgaaatccagatgaagattgatacgattcaaaaaacagtgatac |
22336666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0669 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0669
Description:
Target: scaffold0669; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 412
Target Start/End: Original strand, 3930 - 4267
Alignment:
| Q |
78 |
aaattgaatcgaatcataaagttcagataaagattgatatgattcaaagaacagtgatacaaatcaattaaggcaaag---aataatagagaggtcaaat |
174 |
Q |
| |
|
|||| |||||||||||| |||| ||||| ||| |||||| ||||||||||||| |||||| |||||| ||| || |||| | |||| |||| |
|
|
| T |
3930 |
aaatcgaatcgaatcatgaagtccagatgaagtttgatacgattcaaagaacattgatacgaatcaaccaagccatgatcaaatatcaaagagcccaaac |
4029 |
T |
|
| Q |
175 |
aaatcgattcaaaaatttcaatgaaaagtttgaatcgaatcacacccattaaaa-ccaaagatacctgaggcaaaggatgattcgattcacaattgcttt |
273 |
Q |
| |
|
||| |||||||||| |||||| || ||||||||||||||||| |||| |||| ||||||| | ||| ||| |||||||| |||||| || ||||| |
|
|
| T |
4030 |
gaattgattcaaaaaactcaatggaaggtttgaatcgaatcacatccataaaaaaccaaagacgaccgagacaagggatgatttgattcagaaatgcttg |
4129 |
T |
|
| Q |
274 |
taaaacaatttgaatcgattcagacacacataaaaacacaatctgagaaaacgtgaccttcaagagactcctaaacatagtaataatgtttgttaacata |
373 |
Q |
| |
|
|| ||||||||||| | ||| ||||||||||||||||| ||||||||| |||| | ||||| ||||||||||||| || ||||||| ||| | || |
|
|
| T |
4130 |
gcaa-caatttgaatcaaatcaataacacataaaaacacaatttgagaaaacttgacttccaagaaactcctaaacataatacaaatgtttattatctta |
4228 |
T |
|
| Q |
374 |
tgatactattgtagaggaccatagatcatggattgacta |
412 |
Q |
| |
|
|| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
4229 |
ggacattattgtagaggacctaagatcatggattgacta |
4267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 4006620 - 4006374
Alignment:
| Q |
18 |
tgaatcgattcaagcatttttcatatgaagattgaactgattcaaatctacatagtcaataaattgaatcgaatcataaagttcagataaagattgatat |
117 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| |||||||| | ||||| | || |||||||||||||| | || || || |||||||||| |
|
|
| T |
4006620 |
tgaatcaaatcaagcatttttcatatgaagattgaatccattcaaatttgcataggtataaatttgaatcgaatcatgatgtccaaatgaagattgataa |
4006521 |
T |
|
| Q |
118 |
gattcaaagaacagtgatacaaatcaattaaggcaaaga----ataatagagaggtcaaataaatcgattcaaaaatttcaatgaaaagtttgaatcgaa |
213 |
Q |
| |
|
||||||||| || | |||||||||||| | |||| || ||| ||| ||| ||||| |||||||||||||| | ||||||||||||||||| ||| |
|
|
| T |
4006520 |
aattcaaagagcattaatacaaatcaat--aagcaatgatcagataccagataggccaaatgaatcgattcaaaaactccaatgaaaagtttgaattgaa |
4006423 |
T |
|
| Q |
214 |
tcacacccat-taaaaccaaagatacctgaggcaaaggatgattcgatt |
261 |
Q |
| |
|
| ||| | | ||||||||||| ||| ||| |||| |||||||||||| |
|
|
| T |
4006422 |
tgacatctttagaaaaccaaagacacccgagacaaaagatgattcgatt |
4006374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 4012012 - 4011611
Alignment:
| Q |
18 |
tgaatcgattcaagcatttttcatatgaagattgaactgattcaaatctacatagtcaataaattgaatcgaatcataaagttcagataaagattgatat |
117 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| |||||||| | ||||| | || |||||||||||||| | || || || |||||||||| |
|
|
| T |
4012012 |
tgaatcaaatcaagcatttttcatatgaagattgaatccattcaaatttgcataggtataaatttgaatcgaatcatgatgtccaaatgaagattgataa |
4011913 |
T |
|
| Q |
118 |
gattcaaagaacagtgatacaaatcaattaaggcaaaga----ataatagagaggtcaaataaatcgattcaaaaatttcaatgaaaagtttgaatcgaa |
213 |
Q |
| |
|
||||||||| || | |||||||||||| | |||| || ||| ||| ||| ||||| |||||||||||||| | ||||||||||||||||| ||| |
|
|
| T |
4011912 |
aattcaaagagcattaatacaaatcaataa--gcaatgatcagataccagataggccaaatgaatcgattcaaaaactccaatgaaaagtttgaattgaa |
4011815 |
T |
|
| Q |
214 |
tcacacccatt-aaaaccaaagatacctgaggcaaaggatgattcgattcacaattgcttttaaaacaatttgaatcgattcagacacacataaaaacac |
312 |
Q |
| |
|
| ||| | | ||||||||||| ||| ||| |||| |||||||||||| | || ||| || ||||| ||||| || | || | ||||| |
|
|
| T |
4011814 |
tgacatctttagaaaaccaaagacacccgagacaaaagatgattcgattaaaaaaatgtttggcaaagatttggatcgaatctaaaacccttaaaac--- |
4011718 |
T |
|
| Q |
313 |
aatctgagaaaacgtgaccttcaagagactcctaaacatagtaataatgtttgttaacatatgatactattgtagaggaccatagatcatggattgacta |
412 |
Q |
| |
|
|| ||||||||| |||| ||||||| ||||||||||| | || |||||||||||||||| || ||| ||||||| || ||||||||||||||||| |
|
|
| T |
4011717 |
-at-tgagaaaacttgactttcaagaaactcctaaacacaataccaatgtttgttaacataggacacttttgtagataacttgagatcatggattgacta |
4011620 |
T |
|
| Q |
413 |
gggtgcttt |
421 |
Q |
| |
|
|||| |||| |
|
|
| T |
4011619 |
gggttcttt |
4011611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 421
Target Start/End: Complemental strand, 4006323 - 4006219
Alignment:
| Q |
317 |
tgagaaaacgtgaccttcaagagactcctaaacatagtaataatgtttgttaacatatgatactattgtagaggaccatagatcatggattgactagggt |
416 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||||| | | |||||||||||||||| || ||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
4006323 |
tgagaaaacttgactttcaagaaactcctaaacacaatcccaatgtttgttaacataggacacttttgtagataacttgagatcatggattgactagggt |
4006224 |
T |
|
| Q |
417 |
gcttt |
421 |
Q |
| |
|
|||| |
|
|
| T |
4006223 |
tcttt |
4006219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 66711 - 66890
Alignment:
| Q |
44 |
gaagattgaactgattcaaatctacatagtcaataaattgaatcgaatcataaagttcagataaagattgatatgattcaaagaacagtgatacaaatca |
143 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||||| |||||||||||||| |||| |||| | | ||||| |||||||||||| |||| || |||| |
|
|
| T |
66711 |
gaagattgaatcaattcaaatctgcataggcaataatttgaatcgaatcatgaagtcaagatggaaaatgatacaattcaaagaacattgatgcagatca |
66810 |
T |
|
| Q |
144 |
attaaggcaaaga----ataatagagaggtcaaataaatcgattcaaaaatttcaatgaaaagtttgaatcgaatcacacc |
220 |
Q |
| |
|
| |||| ||| || ||| | ||| | ||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
66811 |
aataag-caatgatcatatatcaaagatgccaaatgaatcgattcaaaaatttcaatgaaccctttgaatcgaatcacacc |
66890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 29389344 - 29389484
Alignment:
| Q |
4 |
aatcacaagatttatgaatcgattcaagcatttttcatatgaagattgaactgattcaaatctacatagtcaataaattgaatcgaatcataaagttcag |
103 |
Q |
| |
|
|||||||| | | |||||||| ||||||| ||| || |||||| ||||| ||||||||| | || || | | ||||||||| | ||||| || |||| |
|
|
| T |
29389344 |
aatcacaaaaataatgaatcgtatcaagcaatttccaaatgaagtttgaatcgattcaaatatgcaaaggccaaaaattgaattgtatcatgaaactcag |
29389443 |
T |
|
| Q |
104 |
ataaagattgatatgattcaaagaacagtgatacaaatcaa |
144 |
Q |
| |
|
|| ||| |||||| |||||||||||| |||||||| ||||| |
|
|
| T |
29389444 |
atgaagtttgatacgattcaaagaacggtgatacatatcaa |
29389484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 53562 - 53676
Alignment:
| Q |
16 |
tatgaatcgattcaagcatttttcatatgaagattgaactgattcaaatctacatagtcaataaattgaatcgaatcataaagttcagataaagattgat |
115 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| || |||||||| | |||| || || ||||||| |||||| || ||||| ||||| ||| |
|
|
| T |
53562 |
tatgaatcgtatcaagcatttttcaaatgaagattcaatcaattcaaatttgtataggcagaaatttgaatcaaatcatggtgtccagatgaagatagat |
53661 |
T |
|
| Q |
116 |
atgattcaaagaaca |
130 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
53662 |
atgattcaaagaaca |
53676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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