View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_low_6 (Length: 426)
Name: NF1482_low_6
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_low_6 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 31106720 - 31106997
Alignment:
| Q |
1 |
aaaatatataaacatcttcatccaattgggacccaccattgagatgataataatactaagaaaagataactgaattgagaatgaagaataaatatcttgg |
100 |
Q |
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| T |
31106720 |
aaaatatataagcatcttcatccaattgggacccaccattgagatgataataatactaggaaaagataactgaattgagaatgaagaataaatatcttgg |
31106819 |
T |
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| Q |
101 |
agnnnnnnncgagcgagtaggagaaagaagttataaccaccttgtagcactcttctcgagtcccacatcgatgaatacttaaaatcatacaccaaagttt |
200 |
Q |
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| T |
31106820 |
agaaaaaaacgagcgagtaggagaaagaagttataaccaccttgtagcactcttcttgagtcccacatcgatgaatacttaaaatcatacaccaaagttt |
31106919 |
T |
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| Q |
201 |
acctataaaataatattagtctatatctatacttcatattagtgtaaccgtttggaaccaattactttgtgttcttca |
278 |
Q |
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| T |
31106920 |
acctataaaataatattagtctatatctatacttcatattagtgtaaccgtttggaacctattactttgtgttcttca |
31106997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 31106995 - 31107077
Alignment:
| Q |
344 |
tcaattagatttttcttcaaatttccaaagaaacattaagtggacaaaccttctttttgaagtcaattaaatttttcttcaaa |
426 |
Q |
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| T |
31106995 |
tcaattagatttttcttcaaacttccaaaaaaacattaagtggacaaatcttctttttgaagtcaattagatttttcttcaaa |
31107077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 31107034 - 31107094
Alignment:
| Q |
321 |
gtggacaaatcttctttttgaagtcaattagatttttcttcaaatttccaaagaaacatta |
381 |
Q |
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| T |
31107034 |
gtggacaaatcttctttttgaagtcaattagatttttcttcaaacttccgaaaaaacatta |
31107094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 31050641 - 31050702
Alignment:
| Q |
14 |
atcttcatccaattgggacccaccattgagatgataataatactaagaaaagataactgaattga |
78 |
Q |
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| T |
31050641 |
atcttcatccaa---ggacacaccattgagataataataatactaagaaaagagaattgaattga |
31050702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 3355 - 3282
Alignment:
| Q |
5 |
tatataaacatcttcatccaattgggacccaccattgagatgataataata---ctaagaaaagataactgaattga |
78 |
Q |
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| T |
3355 |
tatataagcatcttcatccaa---ggagccaccattgagataataataataatactaagaaaagagaattgaattga |
3282 |
T |
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