View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1482_low_7 (Length: 418)
Name: NF1482_low_7
Description: NF1482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1482_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 186 - 402
Target Start/End: Complemental strand, 9418200 - 9417984
Alignment:
| Q |
186 |
ctatgatgctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttacttgaaaagtgatatgtttaact |
285 |
Q |
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| T |
9418200 |
ctatgatgctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttaattgaaaagtgacatgtttaact |
9418101 |
T |
|
| Q |
286 |
aacaattttttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagatacctg |
385 |
Q |
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| T |
9418100 |
aacaattttttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagatacctg |
9418001 |
T |
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| Q |
386 |
ttaccaatccatatttg |
402 |
Q |
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||||||||||||||||| |
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| T |
9418000 |
ttaccaatccatatttg |
9417984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 17813847 - 17813463
Alignment:
| Q |
1 |
aatcattgatgactttaacaatgttattgtggatgtgtctgacagtgatgatgacacaaaaggaaagaaaatgcataggtcagcaatgaatggaatgtat |
100 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |||||||||||| |||||||||||||| |
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| T |
17813847 |
aatctttgatgaccttaacaatgttattgtggatgtgtctgacaatgataatgacacaaaagaaaagaaagtgcataggtcagtgttgaatggaatgtat |
17813748 |
T |
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| Q |
101 |
aacaacactatgtttgaaatgaaaccacctctcccaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacacttctgctatgatgctttgga |
200 |
Q |
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| T |
17813747 |
ggcaacattatatttggaatgaaaccaactctcctaaaagagtggaacacaggtg------------ttaaggacaacgattttgctatgatgttttgca |
17813660 |
T |
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| Q |
201 |
agagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttacttgaaaagtgatatgtttaactaacaattttttataa |
300 |
Q |
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|||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| || ||| |||| |
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| T |
17813659 |
agagcaactt-ataaggtcatccaactcagaggtaataattattttaacgtgttttttcttacttgaaaagtgatatgtttaattaacgatcttt-ataa |
17813562 |
T |
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| Q |
301 |
accttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagatacctgttaccaatccatat |
399 |
Q |
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| T |
17813561 |
tccttgtagcctattggcagtactggattgactgggataactaaaaagttatttcaaagtccatctcacatatcaaggatacctgttaccaatccatat |
17813463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 182 - 402
Target Start/End: Original strand, 12003378 - 12003597
Alignment:
| Q |
182 |
tctgctatgatgctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttacttgaaaagtgatatgttt |
281 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12003378 |
tctgctatgatgctttgcaagagcaactttagaaggtcatccaactcagaggtaataataattt-aacatgttttttcttacttgaaaagtgatatgttt |
12003476 |
T |
|
| Q |
282 |
aactaacaattttttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagata |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12003477 |
aactaacaattttttataaaccttgtagcctattggtagtgctgtattgactaggataactaaaaagttatttcaaagtccatctcacagatcaaagata |
12003576 |
T |
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| Q |
382 |
cctgttaccaatccatatttg |
402 |
Q |
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| ||||||||||||||||||| |
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| T |
12003577 |
catgttaccaatccatatttg |
12003597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 12001951 - 12002139
Alignment:
| Q |
1 |
aatcattgatgactttaacaatgttattgtggatgtgtctgacagtgatgatgacacaaaaggaaagaaaatgcataggtcagcaatgaatggaatgtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
12001951 |
aatcattgatgactttaacaatgttattgtggatgtgtctgacggtgatgatgacacaaaaggaaagaaagtgcataggtcagtgatgaatggaatgtat |
12002050 |
T |
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| Q |
101 |
aacaacactatgtttgaaatgaaaccacctctcccaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacacttctgctat |
189 |
Q |
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| T |
12002051 |
aataacactatatttggaatgaaaccacctctcctaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacacttttgctat |
12002139 |
T |
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